CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90229
EER95720
EER95721
EER97313
KXG20638
KXG20640

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	EER90229	AT1G05200.1	23590882
AT1G05200.1	EER95720	AT1G05200.1	23590882
AT1G05200.1	EER95721	AT1G05200.1	23590882
AT1G05200.1	EER97313	AT1G05200.1	23590882
AT1G05200.1	KXG20638	AT1G05200.1	23590882
AT1G05200.1	KXG20640	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018614_P003	Maize	plastid	89.83	91.14
TraesCS2D01G265700.1	Wheat	plasma membrane	72.05	75.7
TraesCS2B01G285400.1	Wheat	plasma membrane	72.15	75.65
TraesCS2A01G257200.1	Wheat	plasma membrane	72.15	75.57
EER95721	Sorghum	plastid	71.74	71.15
Os07t0103100-01	Rice	plasma membrane	69.48	70.71
Solyc05g045650.2.1	Tomato	plasma membrane	53.96	59.86
Solyc07g052400.2.1	Tomato	cytosol	48.61	58.32
EER97313	Sorghum	plasma membrane	54.68	57.58
PGSC0003DMT400065539	Potato	plasma membrane	54.98	56.85
KRH25388	Soybean	plasma membrane	53.96	56.82
PGSC0003DMT400013497	Potato	plasma membrane	55.4	56.8
VIT_12s0059g02270.t01	Wine grape	plasma membrane	53.85	56.71
KRH56121	Soybean	plasma membrane	53.96	56.51
EER90229	Sorghum	plasma membrane	53.34	56.05
KRH26793	Soybean	plasma membrane	54.47	55.97
CDY06165	Canola	plasma membrane	50.05	55.91
KRH22559	Soybean	plasma membrane	54.06	55.54
KXG20638	Sorghum	plasma membrane	54.57	55.31
KXG20640	Sorghum	plasma membrane	52.42	54.84
Bra015398.1-P	Field mustard	plasma membrane	53.44	54.68
CDY49512	Canola	plasma membrane	53.34	54.46
CDY46839	Canola	plasma membrane	53.13	54.36
CDY10044	Canola	plasma membrane	52.42	54.31
AT1G05200.1	Thale cress	plasma membrane	51.9	52.66
Bra032480.1-P	Field mustard	plasma membrane	51.9	52.55
AT2G32390.5	Thale cress	plasma membrane	50.87	51.94
KXG26996	Sorghum	plasma membrane	49.64	51.66
Bra005589.1-P	Field mustard	plasma membrane	50.15	51.64
KXG29299	Sorghum	plasma membrane	48.51	50.97
OQU84212	Sorghum	mitochondrion	45.22	48.4
CDY66698	Canola	plasma membrane	43.27	47.36
CDY48271	Canola	plastid	35.25	46.41
CDX84735	Canola	plasma membrane	42.34	46.4
CDY12211	Canola	plasma membrane	39.36	43.08
KXG19504	Sorghum	golgi, plasma membrane, vacuole	28.37	31.69
OQU84757	Sorghum	plasma membrane	29.6	31.61
KXG35671	Sorghum	plasma membrane	31.24	31.02
OQU89527	Sorghum	plasma membrane	29.29	30.65
KXG31244	Sorghum	mitochondrion	31.86	30.63
OQU89536	Sorghum	cytosol	27.85	29.98
EER98937	Sorghum	plasma membrane	28.78	29.63
OQU89534	Sorghum	plasma membrane	27.44	29.31
KXG35672	Sorghum	mitochondrion, plasma membrane	28.88	28.97
EER98936	Sorghum	plasma membrane	27.85	28.65
KXG35670	Sorghum	plasma membrane	28.47	28.35

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	EntrezGene:8054496	InterPro:ANF_lig-bd_rcpt
UniProt:C5X740	ncoils:Coil	EnsemblPlants:EER95720	ProteinID:EER95720	ProteinID:EER95720.1	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln	PFAM:PF00060	PFAM:PF00497
PFAM:PF01094	PIRSF:PIRSF037090	PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF7	InterPro:Peripla_BP_I
SMART:SM00079	EnsemblPlantsGene:SORBI_3002G002700	SUPFAM:SSF53822	SUPFAM:SSF53850	SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N
TMHMM:TMhelix	UniParc:UPI0001A83401	RefSeq:XP_002459199.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:371186..376029

Molecular Weight (calculated)

104933.0 Da

IEP (calculated)

6.833

GRAVY (calculated)

0.121

Length

973 amino acids

Sequence
(BLAST)

001: MACSCSSSSS SSYSSSSTTA STTSRRRTSL LLRLLCLCAV LPVALPAAAR PPSVTIGALF TFDSVIGRSA RTAIQLAVDD VNRDPTVLSG TNLSVVFQDT
101: KCSGFVGTIQ ALELMERQVV AVVGPQSSGI AHVVSHVANQ LRVPLLSFAA TDPALASKQY PYFVRAAHDD SFQMAAVADV VAHHGWREVT AVYVDNDYGR
201: GGVVALGDAL EALRARVSYK AAFPPGADRA AIADLLVRAS MMESRVFVVH ATPDSGLDVF AAARSLNMMV AGYVWIATDW LAAAAIDSAG AGAAAMSDML
301: QGVLTLRQYT PDSDAKASLV SRFAADAKSS SNAINAYGLF AYDSVWMAAR AIDQFLSDAG GANVSFSADP NIRDANGSAL GLSALKVFDQ GEQLLRKVML
401: ANFTGVTGSV RFQFDADGTG TLINPAYEIL NVGGTGVRRV AYWSNYTRLS VAAPRLRADG GPPPDSSTTT LQQQQQMYSV IWPGDTTAKP RGWVFPNNGK
501: PLRIGVPYRT TYKQFVSMDR SSPDGVSGYC VDVFNAAVAL LPYPVPASFV LLGDGVKNPS YDSLVQKVAD GVLDAAVGDI SIVTNRTRVV DFTQPYVESG
601: LVIVSTVKAK SSNEWAFLRP FTPGMWAIIG AFFLFVGAVV WILEHRFNPE FRGSPRKQMV TMFWFSFSTM FFAHRENTVS TLGRFVLIIW LFVVLIINSS
701: YTASLTSILT VQQLSTGIQG LDSLLSSNDP IGYQVGSFAR SYMMEELGVP ASRLRELAID DYADSLQRGP SNGGVAAIVD ELPYVELFLS TNCQFRTVGQ
801: EFTKSGWGFA FQRDSPLAVD LSTAILTLSE NGDLQRIHDK WLNPGTCASQ STDSVGADRL NLSSFWGLFL ICGVACFIAL LIYFARILCQ FCEYHGTAAA
901: AQEDPFPDPE RSMRRPARLT SIRDLMSFVD MKEAEVKRAI RSRSDRRLDG SMGARSYTSE GPSLSRPSSM SPV

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.