Factsheet for PGSC0003DMT400025675

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 8
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082610.2.1	Tomato	plasma membrane	96.89	97.2
VIT_18s0122g00990.t01	Wine grape	plasma membrane	70.57	70.34
KRH60898	Soybean	plasma membrane	67.45	67.89
KRH51581	Soybean	plasma membrane	67.24	67.38
CDY35797	Canola	plasma membrane	58.75	66.55
AT1G42540.2	Thale cress	plasma membrane	65.63	65.49
Bra034931.1-P	Field mustard	plasma membrane	64.88	65.02
GSMUA_Achr9P23900_001	Banana	plasma membrane	61.98	62.85
CDX80728	Canola	cytosol	16.33	62.81
GSMUA_Achr3P27050_001	Banana	plasma membrane	61.55	62.62
CDY68928	Canola	extracellular, plasma membrane	34.91	60.98
CDY70557	Canola	extracellular, plasma membrane	34.91	60.98
GSMUA_Achr5P19180_001	Banana	plasma membrane	58.65	60.67
TraesCS2B01G477300.4	Wheat	plasma membrane	57.47	58.22
TraesCS2D01G455600.2	Wheat	plasma membrane	57.36	58.11
TraesCS2A01G455200.2	Wheat	plasma membrane	57.14	57.89
Zm00001d002532_P003	Maize	plasma membrane	56.82	56.82
HORVU2Hr1G104920.3	Barley	plasma membrane	57.47	56.32
KXG26996	Sorghum	plasma membrane	56.07	55.83
Zm00001d015007_P003	Maize	plasma membrane	52.74	54.49
Os02t0117500-01	Rice	plasma membrane	54.67	53.92
PGSC0003DMT400013497	Potato	plasma membrane	54.56	53.53
KXG29299	Sorghum	plasma membrane	53.17	53.46
TraesCSU01G107900.1	Wheat	plasma membrane	53.17	53.46
TraesCS6A01G049000.1	Wheat	plasma membrane	53.38	53.38
TraesCS6B01G066200.1	Wheat	plasma membrane	52.74	53.31
TraesCSU01G108800.1	Wheat	plasma membrane	52.85	53.3
TraesCSU01G108000.1	Wheat	plasma membrane	52.85	53.25
PGSC0003DMT400065539	Potato	plasma membrane	53.81	53.24
TraesCS6B01G065700.1	Wheat	plasma membrane	52.74	53.2
HORVU0Hr1G018770.1	Barley	plasma membrane	45.86	53.18
TraesCS6A01G049900.1	Wheat	plasma membrane	52.63	53.09
TraesCS6A01G048800.1	Wheat	plasma membrane	52.74	53.02
TraesCS6B01G065400.1	Wheat	plasma membrane	52.52	52.81
TraesCSU01G107700.2	Wheat	plasma membrane	52.52	52.81
Os04t0585200-02	Rice	extracellular	30.61	52.78
TraesCS6A01G048700.1	Wheat	plasma membrane	52.42	52.7
TraesCS6B01G065500.1	Wheat	plasma membrane	52.42	52.7
HORVU6Hr1G009520.1	Barley	plasma membrane	52.31	52.59
HORVU2Hr1G049510.4	Barley	plasma membrane	52.2	52.09
HORVU0Hr1G036590.3	Barley	plasma membrane	52.2	52.09
OQU84212	Sorghum	mitochondrion	50.27	51.49
Zm00001d054016_P004	Maize	plasma membrane	52.09	51.0
Zm00001d033769_P001	Maize	golgi, plasma membrane	33.62	49.6
PGSC0003DMT400065543	Potato	plasma membrane	47.37	48.46
PGSC0003DMT400038012	Potato	plasma membrane	53.38	40.47
PGSC0003DMT400067658	Potato	plastid	31.26	34.11
PGSC0003DMT400068189	Potato	plasma membrane	32.22	33.9
PGSC0003DMT400068186	Potato	plasma membrane	31.9	31.83
PGSC0003DMT400027830	Potato	plasma membrane	27.71	30.42
PGSC0003DMT400023744	Potato	cytosol	27.93	29.75
PGSC0003DMT400020569	Potato	cytosol	24.06	28.32
PGSC0003DMT400059098	Potato	golgi	28.25	28.19
Os02t0117600-01	Rice	plastid	0.32	1.24

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0035235	GO:GO:0038023	GO:GO:0070588	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln	UniProt:M1ALU2
PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	EnsemblPlantsGene:PGSC0003DMG400009914	PGSC:PGSC0003DMG400009914	EnsemblPlants:PGSC0003DMT400025675
PIRSF:PIRSF037090	PANTHER:PTHR43891	PANTHER:PTHR43891:SF8	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822
SUPFAM:SSF53850	SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI000294B2F7	SEG:seg

Description

Glutamate receptor 3 plant [Source:PGSC_GENE;Acc:PGSC0003DMG400009914]

Coordinates

chr4:+:71809815..71815611

Molecular Weight (calculated)

102994.0 Da

IEP (calculated)

7.703

GRAVY (calculated)

0.062

Length

931 amino acids

Sequence
(BLAST)

001: MNVVWIIVSC IVCFGVCSDG LSGNGTSRPA VVNVGAIFTF DSTIGRAAKI AIQEAVKDVN SNSSVLQGTK LVVQLQNSNC SGFLGMVGAL KFMETDVVAV
101: IGPQSSVVAH TISHVANELQ VPFLSFAATD PTLSCLQFPY FLRTTQSDLY QMTAIAEIIE FYAWKEVIAI FIDDDYGRNG VSALDEALAT RRCRISYKAG
201: ISPGATVTRG DVMDVMVKVA LMESRVIVLH AYRTLGLMVL SVAHYLGMMG DGYVWISTDW LTTVLDSSPP LLQDTMDTMQ GVLVLRQHTP DSENKRAFSS
301: RWNKLTGGLL GLNSYALHAY DTVWLAAHAI DSFFNQGGTI SFSNDTKLQS VEGSNLHLEA MSIFDGGPLL LKNLLESDFV GLTGPFKFSP DKSLIRPAYD
401: IINVIGTGFR RVGYWSNYSG LSILPPETFY SRPPNRSSTN QKLYSVVWPG NNVQKPRGWV FPNNGKQLKI GVPIRVSYRE FVSQSPGTNN FKGFCIDVFT
501: AAVNLLPYAV PHKFVPYGNG HENPSYTDMV RLITTGKFDG VVGDVAIVTN RTRVVDFTQP YAASGLVVVA PFQKLNSGGW AFLRPFSAQM WGVITIFFLF
601: VGMVVWILEH RTNDEFRGPP KQQLITILWF SLSTLFFAHR ENTVSTLGRM VLIIWLFVVL IINSSYTASL TSILTVQQLY SPIKGIESLK ETDEPIGYQV
701: GSFAERYLEE IGIPKSRLVP LGSPEEYATA LQRGPAKGGV SAVVDERPYV ELFLSNQCKF RIVGQEFTKS GWGFAFPRDS PLAVDLSTAI LTLSENGDLQ
801: RIHDKWLARS ACSLDNAELE SDRLHLRSFS GLFLICGIAC FIALLIYFIQ ILRKFCQTSN AAVDMDGQST TSRSKRLQTL LSIIDEKSDK SNRGSKRRKI
901: DRSVSADNIE NDLGRDSRWR ESQVPSQNEI H

Best Arabidopsis Sequence Match ( AT1G42540.2 )
(BLAST)

001: MKQLWTFFFL SFLCSGLFRR THSEKPKVVK IGSIFSFDSV IGKVAKIAID EAVKDVNSNP DILSGTKFSV SMQNSNCSGF MGMVEALRFM EKDIVGIIGP
101: QCSVVAHMIS HMANELRVPL LSFAVTDPVM SPLQFPYFIR TTQSDLYQMD AIASIVDFYG WKEVIAVFVD DDFGRNGVAA LNDKLASRRL RITYKAGLHP
201: DTAVNKNEIM NMLIKIMLLQ PRIVVIHVYS ELGFAVFKEA KYLGMMGNGY VWIATDWLST NLDSSSPLPA ERLETIQGVL VLRPHTPDSD FKREFFKRWR
301: KMSGASLALN TYGLYAYDSV MLLARGLDKF FKDGGNISFS NHSMLNTLGK SGNLNLEAMT VFDGGEALLK DILGTRMVGL TGQLQFTPDR SRTRPAYDII
401: NVAGTGVRQI GYWSNHSGLS TVLPELLYTK EKPNMSTSPK LKHVIWPGET FTKPRGWVFS NNGKELKIGV PLRVSYKEFV SQIRGTENMF KGFCIDVFTA
501: AVNLLPYAVP VKFIPYGNGK ENPSYTHMVE MITTGNFDGV VGDVAIVTNR TKIVDFTQPY AASGLVVVAP FKKLNSGAWA FLRPFNRLMW AVTGCCFLFV
601: GIVVWILEHR TNDEFRGPPK RQCVTILWFS FSTMFFAHRE NTVSTLGRLV LIIWLFVVLI INSSYTASLT SILTVQQLSS PIKGIESLRE RDDPIGYQVG
701: SFAESYLRNE LNISESRLVP LGTPEAYAKA LKDGPSKGGV AAIVDERPYV ELFLSSNCAY RIVGQEFTKS GWGFAFPRDS PLAIDLSTAI LELAENGDLQ
801: RIHDKWLMKN ACTLENAELE SDRLHLKSFW GLFLICGVAC LLALFLYFVQ IIRQLYKKPT DDAIARDQQQ NHDSSSMRST RLQRFLSLMD EKEESKHESK
901: KRKIDGSMND TSGSTRSRGF DRERSFNSVN PLD

Arabidopsis Description

GLR3.3Glutamate receptor 3.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.