Factsheet for PGSC0003DMT400067658

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006500.2.1	Tomato	extracellular	94.14	82.7
VIT_04s0069g00390.t01	Wine grape	mitochondrion, plasma membrane	57.44	59.18
VIT_04s0069g00010.t01	Wine grape	mitochondrion, plasma membrane	57.68	56.81
VIT_04s0069g00170.t01	Wine grape	plasma membrane	58.97	54.32
VIT_04s0069g00560.t01	Wine grape	plasma membrane	56.86	54.13
VIT_04s0069g00670.t01	Wine grape	plasma membrane	57.33	53.21
VIT_04s0069g00620.t01	Wine grape	plasma membrane	60.26	51.92
VIT_04s0069g00060.t01	Wine grape	plasma membrane	57.68	50.26
VIT_04s0069g00540.t01	Wine grape	plasma membrane	41.27	49.79
VIT_04s0069g00260.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	32.24	49.55
Bra040758.1-P	Field mustard	cytosol, peroxisome, plasma membrane	34.0	48.9
VIT_04s0069g00380.t01	Wine grape	cytosol	23.21	48.29
VIT_04s0069g00230.t01	Wine grape	plasma membrane	57.91	48.29
VIT_04s0069g00200.t01	Wine grape	cytosol	24.85	48.07
CDY70035	Canola	cytosol, plasma membrane	45.02	47.47
CDY31759	Canola	cytosol, peroxisome, plasma membrane	25.79	46.71
CDX72325	Canola	plasma membrane	36.58	46.29
VIT_04s0069g00720.t01	Wine grape	cytosol	32.24	46.06
CDY58212	Canola	cytosol, plasma membrane	44.9	45.92
AT2G29110.2	Thale cress	plasma membrane	50.41	45.36
PGSC0003DMT400068189	Potato	plasma membrane	46.07	44.41
Bra023313.1-P	Field mustard	plasma membrane	44.67	44.35
CDY51113	Canola	plasma membrane	44.67	44.35
CDY36173	Canola	plasma membrane	41.85	44.29
Bra032072.1-P	Field mustard	plasma membrane	46.42	44.2
CDX85724	Canola	plasma membrane	44.43	44.12
AT2G29100.2	Thale cress	plasma membrane	48.07	43.52
AT2G29120.1	Thale cress	plasma membrane	48.53	43.49
AT5G27100.1	Thale cress	plasma membrane	45.72	43.29
Bra018409.1-P	Field mustard	cytosol, nucleus, plasma membrane	47.36	43.25
CDY31756	Canola	cytosol, peroxisome, plastid	43.96	43.2
AT2G24720.1	Thale cress	plasma membrane	46.54	43.15
CDX73196	Canola	cytosol, peroxisome, plasma membrane	46.07	43.04
CDY54213	Canola	plasma membrane	44.78	42.97
Bra032063.1-P	Field mustard	plasma membrane	46.42	42.9
CDY45595	Canola	plasma membrane	42.56	42.21
AT5G11210.5	Thale cress	plasma membrane	45.37	42.16
CDY39533	Canola	plasma membrane	47.83	42.02
PGSC0003DMT400023744	Potato	cytosol	43.02	41.99
CDY31755	Canola	cytosol	45.37	41.93
CDY00544	Canola	plasma membrane	37.98	41.59
Bra040761.1-P	Field mustard	cytosol	45.25	41.46
AT2G24710.3	Thale cress	plasma membrane	44.67	41.46
Bra040760.1-P	Field mustard	cytosol	40.91	41.45
AT4G31710.2	Thale cress	plasma membrane	44.08	41.23
CDY38574	Canola	plasma membrane	46.66	41.16
PGSC0003DMT400068186	Potato	plasma membrane	44.67	40.84
CDY56837	Canola	plasma membrane	43.85	40.74
AT5G11180.2	Thale cress	plasma membrane	45.6	40.23
CDY68132	Canola	plasma membrane	45.25	38.26
Bra015817.1-P	Field mustard	plasma membrane	45.25	38.26
CDY63640	Canola	cytosol	24.27	38.12
CDY50141	Canola	plasma membrane	23.68	38.11
CDY13449	Canola	cytosol	41.62	37.02
Bra023989.1-P	Field mustard	cytosol	41.62	36.04
PGSC0003DMT400025675	Potato	plasma membrane	34.11	31.26
PGSC0003DMT400027830	Potato	plasma membrane	30.6	30.78
PGSC0003DMT400020569	Potato	cytosol	28.14	30.34
PGSC0003DMT400013497	Potato	plasma membrane	33.65	30.24
PGSC0003DMT400065539	Potato	plasma membrane	33.18	30.07
PGSC0003DMT400065543	Potato	plasma membrane	31.3	29.34
PGSC0003DMT400059098	Potato	golgi	30.95	28.3
VIT_04s0069g00330.t01	Wine grape	plastid	57.09	27.67
PGSC0003DMT400038012	Potato	plasma membrane	32.12	22.31

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln	UniProt:M1CHN3	PFAM:PF00060
PFAM:PF00497	PFAM:PF01094	EnsemblPlantsGene:PGSC0003DMG400026312	PGSC:PGSC0003DMG400026312	EnsemblPlants:PGSC0003DMT400067658	PIRSF:PIRSF037090
PANTHER:PTHR43891	PANTHER:PTHR43891:SF3	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850
InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI0002951C8D	SEG:seg	:	:

Description

Glutamate-gated kainate-type ion channel receptor subunit GluR5 [Source:PGSC_GENE;Acc:PGSC0003DMG400026312]

Coordinates

chr8:-:2110111..2115198

Molecular Weight (calculated)

95698.9 Da

IEP (calculated)

6.271

GRAVY (calculated)

-0.023

Length

853 amino acids

Sequence
(BLAST)

001: MQADFLINLG QKSQVPIISF SATSPSISSF RNQYFVRTTH NDSSQVKPIS SIIQSFGWRQ IVPIYIDNQF GEGIIPFLAD ALEEINTRIP YRSVISEFAT
101: LDQIKSELLK LMNMQTRVFI VHMPISLGSK LFTMAKEIGM MSEGFVWIVT DAMANQLNSM DASVIESMEG VIGVKPYVPK SKKVEDFTQR WKIKFREENP
201: RIVDVALDVY GLWAYDSATA LAMAVEKSRI SGAFFRKPNV SGNATDLEAF GVSRDGPKLL KAILNTTFKG LSGDFQLVDG QLQSPPYQII NVVGNGAKEI
301: GFWTRENGIV RKLNLRRGYS VSKENFGSII WPGDSTSVPK GWVIPTNGKK LKIGVPVKDG FTEFVKVTRD LTTNTTKVTG YCIDVFDAVM EALPYYVPYE
401: YVPFAAPDGK SAGDYNELVY QVFLGNFDVV VGDTTIVANR SQFVDFTLPY TESGVTMMVP IKDDNRDNTW VFLKPLTWEL WLTSFCSFVF IGFVIWLLEH
501: RVNEDFRGPF WHQVGMIFWF SFSTMVFAQK ERIVSNLARF VLIIWFLVVL ILTSSYTASL TSMLTVEKLQ PTVKDVKELL KSKDYVGYQP GSFVVGLLRK
601: MNFDEDRLKA YNTPEECVDL LAKGSSNGGI AAVFDEIPYV KLFLANYCLK FTTVGPTYKT DGFGFAFPIG SPLVPDVSRA VLNVTEGEKM VQIERAWFDE
701: STCSDSSTSL SSNSLGLDSF WGLFVMAVIA AVLALVIFLT KFIHEHWYII RRSNLSLHER SRILARKFDT KDYSCHTFRK SELRDVLADS THDLDCSRSP
801: HGNLSSLPSP RTIGPPSPSN SSHTEQMLHF PGEEGDSPSR GENEAVNGQV EMV

Best Arabidopsis Sequence Match ( AT2G29110.1 )
(BLAST)

001: MNPKKNNNTF LSYFVCLFLL LEVGLGQNQI SEIKVGVVLD LNTTFSKICL TSINLALSDF YKDHPNYRTR LALHVRDSMK DTVQASAAAL DLIQNEQVSA
101: IIGPIDSMQA KFMIKLANKT QVPTISFSAT SPLLTSIKSD YFVRGTIDDS YQVKAIAAIF ESFGWRSVVA IYVDNELGEG IMPYLFDALQ DVQVDRSVIP
201: SEANDDQILK ELYKLMTRQT RVFVVHMASR LASRIFEKAT EIGMMEEGYV WLMTNGMTHM MRHIHHGRSL NTIDGVLGVR SHVPKSKGLE DFRLRWKRNF
301: KKENPWLRDD LSIFGLWAYD STTALAMAVE KTNISSFPYN NASGSSNNMT DLGTLHVSRY GPSLLEALSE IRFNGLAGRF NLIDRQLESP KFEIINFVGN
401: EERIVGFWTP SNGLVNVNSN KTTSFTGERF GPLIWPGKST IVPKGWEIPT NGKKIKVGVP VKKGFFNFVE VITDPITNIT TPKGYAIDIF EAALKKLPYS
501: VIPQYYRFES PDDDYDDLVY KVDNGTLDAV VGDVTITAYR SLYADFTLPY TESGVSMMVP VRDNENKNTW VFLKPWGLDL WVTTACFFVL IGFVVWLFEH
601: RVNTDFRGPP HHQIGTSFWF SFSTMVFAHR EKVVSNLARF VVVVWCFVVL VLTQSYTANL TSFLTVQRFQ PAAINVKDLI KNGDYVGYQH GAFVKDFLIK
701: EGFNVSKLKP FGSSEECHAL LSNGSISAAF DEVAYLRAIL SQYCSKYAIV EPTFKTAGFG FAFPRNSPLT GDVSKAILNV TQGDEMQHIE NKWFMKQNDC
801: PDPKTALSSN RLSLRSFWGL FLIAGIASFL ALLIFVFLFL YENRHTLCDD SEDSIWRKLT SLFRNFDEKD IKSHTFKSSA VHHVSSPMTQ YIPSPSTLQI
901: APRPHSPSQD RAFELRRVSF TPNEERLTTQ TIHFEDEESD IECVVEQ

Arabidopsis Description

ATGLR2.8Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:A0A1P8B074]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.