Factsheet for PGSC0003DMT400023744

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067658	Potato	plastid	41.99	43.02
GSMUA_Achr7P16350_001	Banana	cytosol, peroxisome, plasma membrane	33.18	39.78
GSMUA_Achr6P26740_001	Banana	cytosol, plasma membrane, plastid	29.63	39.18
HORVU5Hr1G072250.1	Barley	cytosol, peroxisome, plastid	22.31	39.0
HORVU7Hr1G081410.3	Barley	plasma membrane	25.51	38.99
PGSC0003DMT400068189	Potato	plasma membrane	39.13	38.64
HORVU5Hr1G063420.2	Barley	cytosol, peroxisome, plasma membrane	23.57	38.22
HORVU5Hr1G063490.1	Barley	golgi, vacuole	18.42	37.88
OQU89536	Sorghum	cytosol	38.67	37.39
GSMUA_Achr3P04970_001	Banana	plasma membrane	40.73	37.2
HORVU7Hr1G031400.1	Barley	plasma membrane	30.78	37.05
Os09t0428300-00	Rice	plasma membrane	36.84	36.93
TraesCS5A01G259100.1	Wheat	cytosol, nucleus, plasma membrane	30.78	36.9
TraesCS7B01G242400.1	Wheat	plasma membrane	37.99	36.69
TraesCS5A01G218900.1	Wheat	plasma membrane	32.38	36.47
TraesCS5D01G226500.2	Wheat	cytosol	36.5	36.42
TraesCS5B01G217800.1	Wheat	plasma membrane	35.47	36.38
GSMUA_Achr6P01870_001	Banana	cytosol	36.27	36.19
TraesCS7A01G341200.1	Wheat	plasma membrane	36.96	36.09
TraesCS2D01G025600.1	Wheat	plasma membrane	26.89	36.04
PGSC0003DMT400068186	Potato	plasma membrane	38.44	36.01
Os06t0190800-01	Rice	cytosol, plasma membrane	33.3	35.49
Os09t0429000-00	Rice	plasma membrane	37.87	35.48
HORVU5Hr1G072170.1	Barley	plasma membrane	32.38	35.46
GSMUA_AchrUn_...	Banana	golgi	34.55	35.45
TraesCS5A01G218600.1	Wheat	plasma membrane	36.84	35.27
TraesCS5D01G228000.1	Wheat	plasma membrane	31.92	35.23
HORVU5Hr1G063530.5	Barley	plasma membrane	36.96	35.22
HORVU5Hr1G063540.6	Barley	plasma membrane	36.73	35.2
HORVU5Hr1G063500.1	Barley	plasma membrane	37.3	35.09
Os09t0429400-00	Rice	golgi	37.3	34.9
TraesCS5A01G218700.1	Wheat	plasma membrane	36.61	34.9
TraesCS5B01G217700.1	Wheat	plasma membrane	36.38	34.83
OQU84757	Sorghum	plasma membrane	36.16	34.69
TraesCS5D01G266800.1	Wheat	plasma membrane	35.47	34.68
TraesCS5D01G226600.1	Wheat	plasma membrane	36.84	34.66
TraesCS5A01G218400.1	Wheat	plasma membrane	36.61	34.56
Os09t0429200-00	Rice	plasma membrane	37.41	34.49
TraesCS5A01G219800.1	Wheat	plasma membrane	36.5	34.49
Os09t0429500-00	Rice	plasma membrane	37.19	34.36
TraesCS5D01G227800.1	Wheat	plasma membrane	36.27	34.31
EER98936	Sorghum	plasma membrane	37.07	34.25
TraesCS5D01G226700.3	Wheat	plasma membrane	35.93	34.24
TraesCS5B01G257800.1	Wheat	plasma membrane	35.01	33.89
TraesCS5D01G266900.1	Wheat	golgi, plasma membrane	24.6	33.86
GSMUA_Achr4P02110_001	Banana	cytosol	31.24	33.79
HORVU5Hr1G010420.17	Barley	plasma membrane	34.78	33.78
KXG19504	Sorghum	golgi, plasma membrane, vacuole	33.64	33.75
EER98937	Sorghum	plasma membrane	36.38	33.65
TraesCS5A01G042800.1	Wheat	plasma membrane	34.44	33.52
Os02t0787600-01	Rice	golgi	37.87	33.5
TraesCS7B01G057800.1	Wheat	plasma membrane	33.64	33.41
TraesCS5B01G046400.1	Wheat	plasma membrane	34.32	33.41
GSMUA_Achr9P13570_001	Banana	plasma membrane	34.78	33.33
TraesCS5D01G226800.1	Wheat	plasma membrane	36.27	33.3
TraesCS5B01G218900.1	Wheat	plasma membrane	36.04	33.3
OQU89534	Sorghum	plasma membrane	34.67	33.26
TraesCS5D01G225900.1	Wheat	golgi	32.95	33.26
TraesCS5D01G051300.1	Wheat	golgi	34.1	33.15
TraesCS5B01G218700.1	Wheat	plasma membrane	35.13	32.9
HORVU6Hr1G083680.5	Barley	plasma membrane	38.1	32.87
TraesCS6D01G330900.1	Wheat	plasma membrane	37.87	32.84
KXG31244	Sorghum	mitochondrion	37.87	32.71
Zm00001d020563_P001	Maize	plasma membrane	35.58	32.67
Os09t0431100-01	Rice	plasma membrane	35.58	32.57
TraesCS6D01G330500.1	Wheat	plasma membrane	37.87	32.55
TraesCS5B01G217500.1	Wheat	plasma membrane	35.35	32.46
TraesCS5D01G226400.1	Wheat	plasma membrane	35.13	32.35
TraesCS5B01G217000.1	Wheat	mitochondrion, plasma membrane	33.07	32.33
TraesCS6A01G347900.1	Wheat	plasma membrane	37.19	32.24
TraesCS6B01G380800.1	Wheat	plasma membrane	37.64	32.19
HORVU6Hr1G083570.16	Barley	plasma membrane	37.41	32.12
TraesCS6B01G438400.1	Wheat	plasma membrane	33.07	32.08
TraesCS6B01G381400.1	Wheat	plasma membrane	37.19	32.05
OQU89527	Sorghum	plasma membrane	34.1	32.04
Zm00001d018332_P001	Maize	plastid	36.5	32.03
TraesCS5A01G218300.1	Wheat	plasma membrane	34.78	31.87
TraesCS2D01G462300.1	Wheat	plasma membrane	35.47	31.83
TraesCS6A01G347400.1	Wheat	plastid	37.64	31.63
TraesCS5D01G226300.1	Wheat	plasma membrane	34.78	31.63
TraesCS5B01G217200.1	Wheat	mitochondrion, plasma membrane	35.24	31.49
KXG35671	Sorghum	plasma membrane	35.24	31.43
Zm00001d005782_P001	Maize	plasma membrane	35.13	31.33
HORVU5Hr1G063480.2	Barley	golgi, plasma membrane	35.01	31.32
Zm00001d005783_P002	Maize	plasma membrane	34.78	31.18
TraesCS5A01G218200.1	Wheat	plasma membrane	34.55	31.17
TraesCS5D01G226100.1	Wheat	mitochondrion, plasma membrane	35.01	31.16
Os09t0431200-01	Rice	endoplasmic reticulum, extracellular	33.87	31.16
KXG35672	Sorghum	mitochondrion, plasma membrane	34.55	31.13
TraesCS5A01G218000.1	Wheat	plasma membrane	34.78	31.02
KXG35670	Sorghum	plasma membrane	34.55	30.91
TraesCS5B01G217400.1	Wheat	plasma membrane, plastid	35.01	30.88
Os09t0428600-00	Rice	plasma membrane	19.11	30.87
TraesCS5D01G226000.1	Wheat	plasma membrane	32.95	30.87
TraesCS3A01G023600.2	Wheat	plasma membrane	31.81	30.82
TraesCS5B01G217100.1	Wheat	plasma membrane	32.95	30.77
HORVU5Hr1G063440.1	Barley	plasma membrane	34.44	30.65
Zm00001d020568_P001	Maize	golgi	33.64	30.59
TraesCS7A01G154100.1	Wheat	plasma membrane	32.38	30.23
GSMUA_Achr6P01860_001	Banana	cytosol, peroxisome, plasma membrane	33.41	30.23
HORVU5Hr1G063430.8	Barley	plasma membrane	32.38	30.14
Zm00001d052064_P001	Maize	mitochondrion, plasma membrane	35.01	30.09
Zm00001d018329_P001	Maize	plasma membrane	34.21	29.9
HORVU5Hr1G063510.1	Barley	golgi, mitochondrion, plasma membrane	34.55	29.75
PGSC0003DMT400027830	Potato	plasma membrane	28.49	29.36
TraesCS6B01G380900.1	Wheat	plasma membrane	31.24	28.35
PGSC0003DMT400025675	Potato	plasma membrane	29.75	27.93
PGSC0003DMT400059098	Potato	golgi	29.52	27.65
PGSC0003DMT400020569	Potato	cytosol	24.94	27.56
PGSC0003DMT400065539	Potato	plasma membrane	29.06	26.99
PGSC0003DMT400013497	Potato	plasma membrane	29.18	26.87
PGSC0003DMT400065543	Potato	plasma membrane	26.32	25.27
PGSC0003DMT400038012	Potato	plasma membrane	28.6	20.36
Os09t0428750-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln	UniProt:M1AIX2	PFAM:PF00060
PFAM:PF00497	PFAM:PF01094	EnsemblPlantsGene:PGSC0003DMG400009185	PGSC:PGSC0003DMG400009185	EnsemblPlants:PGSC0003DMT400023744	PIRSF:PIRSF037090
PANTHER:PTHR43891	PANTHER:PTHR43891:SF3	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850
InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI0002952FEA	SEG:seg	:	:

Description

Glutamate-gated kainate-type ion channel receptor subunit GluR5 [Source:PGSC_GENE;Acc:PGSC0003DMG400009185]

Coordinates

chr3:-:61852930..61857825

Molecular Weight (calculated)

97196.0 Da

IEP (calculated)

7.473

GRAVY (calculated)

0.015

Length

874 amino acids

Sequence
(BLAST)

001: MNLGERAQVP IVSFSATSPS LQPPKFFVQT AQTDDTEVGV IAAIVKAFQW NQVVIIYEDS EYGNGIVPYL SNALQDINAH VAYKSLIPVS ADEDFTLKEL
101: YKMMTMQTRV FIAHLSHSLG AKFFLKAKAI GMMSEGYVWI ITSGLMDFLP SMNSHVVEAM QGVLGVKPLI PKTSHLESLR LQKTIFDPVN PGYKSADMVS
201: IFDVWAYDTM WALAMAAEQV GSHYPEASYQ DTTADLNSSD PFNLPISKTG PKLLKAILTT RFKGLSGMFH LVGGKLYPTS YKILNVVGNG EKEVAVWTQA
301: HGFKRVRHNT SDKFDSTPKE EFNSNIIWPG KSRVLPRGWE VPVRGKRLKV AVAVRPGFEE YLNVMKDSRT GVVHFSGYYI DVFKSVMAAL PYAVPYDFFH
401: FEKPDGSCAG SYNDLVNQVF LQKYDAAIGD ITITGNRSNY VDFTLPFAEG GVVRIVPITY EDDNNMWTFL KPMKKELWLT SIAFFFVTGL AVWILEHRIS
501: SAFRGPPSHH LGMIFYFPFS TLVFAHRERI VSNLARLVVV VWMFVVLILN STYTASLSSR LTVQRLRPAI ADVKELIRKG HSVGCYQGSF VCDILRGVGF
601: EDSKIKMYRF PEDYEEALSI GSKSGNISAL FDVVPYSKLF LAKYCDKYTI VGPTYRTEGF AFVFPKGSPL VADVSQAVIN LTENGEMLDI QQKWSVGDPT
701: CNGPDSIVTS VSVSLQGFKG LFAITGTITS SCVLIFIVIY VTKNRSSLQQ ILNSRSTVWS KIKEIGRHFD QRDLSSHPST MARDPQFKYP KAEVAEIVSS
801: SQSVDLSNSN LMVLSLPMNI LSTHSNNIAL PNIPTNATSS NSTVLAPILP EESNTAIDVT DRLQQQCCDA QLES

Best Arabidopsis Sequence Match ( AT2G29110.2 )
(BLAST)

001: MMNPKKNNNT FLSYFVCLFL LLEVGLGQNQ ISEIKVGVVL DLNTTFSKIC LTSINLALSD FYKDHPNYRT RLALHVRDSM KDTVQASAAA LDLIQNEQVS
101: AIIGPIDSMQ AKFMIKLANK TQVPTISFSA TSPLLTSIKS DYFVRGTIDD SYQVKAIAAI FESFGWRSVV AIYVDNELGE GIMPYLFDAL QDVQVDRSVI
201: PSEANDDQIL KELYKLMTRQ TRVFVVHMAS RLASRIFEKA TEIGMMEEGY VWLMTNGMTH MMRHIHHGRS LNTIDGVLGV RSHVPKSKGL EDFRLRWKRN
301: FKKENPWLRD DLSIFGLWAY DSTTALAMAV EKTNISSFPY NNASGSSNNM TDLGTLHVSR YGPSLLEALS EIRFNGLAGR FNLIDRQLES PKFEIINFVG
401: NEERIVGFWT PSNGLVNVNS NKTTSFTGER FGPLIWPGKS TIVPKGWEIP TNGKKIKVGV PVKKGFFNFV EVITDPITNI TTPKGYAIDI FEAALKKLPY
501: SVIPQYYRFE SPDDDYDDLV YKVDNGTLDA VVGDVTITAY RSLYADFTLP YTESGVSMMV PVRDNENKNT WVFLKPWGLD LWVTTACFFV LIGFVVWLFE
601: HRVNTDFRGP PHHQIGTSFW FSFSTMVFAH REKVVSNLAR FVVVVWCFVV LVLTQSYTAN LTSFLTVQRF QPAAINVKDL IKNGDYVGYQ HGAFVKDFLI
701: KEGFNVSKLK PFGSSEECHA LLSNGSISAA FDEVAYLRAI LSQYCSKYAI VEPTFKTAGF GFAFPRNSPL TGDVSKAILN VTQGDEMQHI ENKWFMKQND
801: CPDPKTALSS NRLSLRSFWG LFLIAGIASF LALLIFVFLF LYENRHTLCD DSEDSIWRKL TSLFRNFDEK DIKSHTFKSS AVHHVSSPMT QYIPSPSTLQ
901: IAPRPHSPSQ DRAFELRRVS FTPNEERLTT QTIHFEDEES DIECVVEQ

Arabidopsis Description

ATGLR2.8Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:A0A1P8B074]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.