Factsheet for GSMUA_Achr9P30180_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P00750_001
GSMUA_Achr6P00460_001
GSMUA_Achr9P02750_001
GSMUA_Achr9P11690_001
GSMUA_Achr9P30180_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	GSMUA_Achr5P00750_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr6P00460_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr9P02750_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr9P11690_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr9P30180_001	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11690_001	Banana	plasma membrane	64.52	64.95
Zm00001d014458_P001	Maize	plasma membrane	64.63	63.15
GSMUA_Achr9P02750_001	Banana	plasma membrane	64.18	62.92
Zm00001d014451_P001	Maize	plasma membrane	66.07	62.72
Os06t0680500-01	Rice	cytosol, plasma membrane	62.07	62.7
TraesCS7A01G455200.1	Wheat	plasma membrane	65.07	62.63
GSMUA_Achr6P00460_001	Banana	plasma membrane	64.4	62.59
EER90229	Sorghum	plasma membrane	64.29	62.42
TraesCS7B01G355500.1	Wheat	plasma membrane	64.63	62.14
HORVU1Hr1G086120.3	Barley	plasma membrane	64.29	61.95
HORVU7Hr1G104490.2	Barley	golgi, plasma membrane	64.4	61.93
TraesCS1D01G398500.1	Wheat	plasma membrane	63.96	61.43
KXG20638	Sorghum	plasma membrane	65.41	61.25
TraesCS1A01G390300.2	Wheat	plasma membrane	63.85	61.19
VIT_12s0059g02270.t01	Wine grape	plasma membrane	62.85	61.15
TraesCS1B01G418500.1	Wheat	plasma membrane	63.63	61.05
TraesCS7D01G444100.2	Wheat	plasma membrane	65.18	60.66
KXG20640	Sorghum	plasma membrane	62.4	60.32
Solyc05g045650.2.1	Tomato	plasma membrane	58.84	60.32
Zm00001d014456_P001	Maize	plasma membrane	61.29	59.57
Solyc07g052400.2.1	Tomato	cytosol	52.5	58.2
CDY06165	Canola	plasma membrane	55.73	57.52
KRH26793	Soybean	plasma membrane	60.29	57.23
KRH22559	Soybean	plasma membrane	60.29	57.23
PGSC0003DMT400065539	Potato	plasma membrane	59.62	56.96
KRH56121	Soybean	plasma membrane	58.73	56.84
PGSC0003DMT400013497	Potato	plasma membrane	59.73	56.59
KRH25388	Soybean	plasma membrane	58.06	56.49
Bra015398.1-P	Field mustard	plasma membrane	59.29	56.05
CDY46839	Canola	plasma membrane	59.18	55.94
GSMUA_Achr9P23900_001	Banana	plasma membrane	57.06	55.88
GSMUA_Achr3P27050_001	Banana	plasma membrane	56.84	55.85
CDY49512	Canola	plasma membrane	59.07	55.72
CDY10044	Canola	plasma membrane	58.18	55.7
GSMUA_Achr5P19180_001	Banana	plasma membrane	55.39	55.33
AT1G05200.1	Thale cress	plasma membrane	58.62	54.95
Bra005589.1-P	Field mustard	plasma membrane	57.29	54.5
AT2G32390.5	Thale cress	plasma membrane	57.73	54.46
Bra032480.1-P	Field mustard	plasma membrane	57.84	54.11
CDY48271	Canola	plastid	41.6	50.61
GSMUA_Achr5P00740_001	Banana	plasma membrane	47.72	49.94
CDX84735	Canola	plasma membrane	49.05	49.66
CDY66698	Canola	plasma membrane	48.94	49.49
CDY12211	Canola	plasma membrane	45.61	46.12
GSMUA_Achr5P00750_001	Banana	mitochondrion	77.75	37.34
GSMUA_Achr7P16350_001	Banana	cytosol, peroxisome, plasma membrane	27.59	34.02
GSMUA_Achr6P26740_001	Banana	cytosol, plasma membrane, plastid	24.92	33.89
GSMUA_Achr6P01870_001	Banana	cytosol	31.92	32.76
GSMUA_Achr4P02110_001	Banana	cytosol	28.7	31.93
GSMUA_AchrUn_...	Banana	golgi	29.7	31.34
GSMUA_Achr3P04970_001	Banana	plasma membrane	32.7	30.72
GSMUA_Achr9P13570_001	Banana	plasma membrane	30.81	30.37
GSMUA_Achr2P15450_001	Banana	plasma membrane	25.92	29.31
GSMUA_Achr4P30920_001	Banana	plasma membrane	24.69	28.24
GSMUA_Achr6P01860_001	Banana	cytosol, peroxisome, plasma membrane	29.37	27.33

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0035235	GO:GO:0038023	EnsemblPlantsGene:GSMUA_Achr9G30180_001	EnsemblPlants:GSMUA_Achr9P30180_001	EnsemblPlants:GSMUA_Achr9T30180_001	InterPro:Iontro_rcpt
InterPro:Iontropic_Glu_rcpt_pln	UniProt:M0U4S5	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090
PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF17	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822
SUPFAM:SSF53850	SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI0002955023	SEG:seg

Description

Glutamate receptor 3.4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G30180_001]

Coordinates

chr9:-:33553066..33557229

Molecular Weight (calculated)

98680.4 Da

IEP (calculated)

6.860

GRAVY (calculated)

0.060

Length

899 amino acids

Sequence
(BLAST)

001: MWFLLGLHGA VCQIGNGPSS SSKPTMVNIG ALFTYNSTIG RAAKIGIELA AEDVNADSTI LAGTTLNVIA QDTNCSGFVG TVEALQLMEK KVVAVVGPQS
101: SGIGHVISHV VNELHVPLLS FAATDPTLSP LEFPYFIRTT HSDYFQMNAV ADLVEHFGWR EVTAIYVDDN YGRGGVIALG DALARKRSKI SYKAGFPPGA
201: DSDVIRDLLA GVNLMESRVY VVHVNPDSGL SVFSLAKNMG MMGTGYVWIA TDWLASDLDS FGTEDPSTMS LVQGVIVLRH HTPESDLKRR LTSRWKSMIQ
301: EGNTTASLNS YGLYAYDSVW LVARAIDRFL SAGQIINFSV DPRLHDAKGS SLRLATLRVF DGGERLLHQL LLTNFTGVSG RLQFDSDRNL VRPAYDILNI
401: EGTGPRLIGY WSNYSGLSLH GVVWPGETTT QPRGWVFPNN GKPLRIGVPN KASFKEIVWG SSNSTDPSGF CIDVFNAAVK LLPYPVPCKF IVIGDGSQNP
501: NYDDIVSMEL DAAVGDIAIV RNRTRIVDFT QPYIESGLVI VTRVRESSSN AWAFLKPFTV KMWCVIGAFF FLVGAVVWIL EHRSNPEFRG APRKQIATMF
601: WFSFSTMFFA HRENTVSTLG RFVLIVWMFV VLIINSSYTA SLTSILTVQQ LSSGIKGLDS LLSSSEPIGY QKGKFSRNYM IEELNIPQSR LVPLNSPAEY
701: ARALRLGPKG GGVAAIVDEI PYVEIFLSAY CQFKIVGQEF TKNGWGFAFQ RDSPLAVDLS TAILALSENG DLQTIHEKWL SRAGCPSQGV EEEANRLSLS
801: SFWGLFLLSG IVCFLALILF CIKVCYQYAM YSSAEADKPK ETEPSNGSQH ALCKLKSIKA LIRFFDMKEE EINKVITKKP SGTQNGPQTS DDGHSLPSS

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.