Factsheet for VIT_08s0007g08940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09759	Soybean	cytosol, endoplasmic reticulum, nucleus	82.04	82.23
KRH23559	Soybean	nucleus	81.81	82.0
PGSC0003DMT400077823	Potato	cytosol	11.7	81.45
Solyc04g016240.2.1	Tomato	cytosol, nucleus, plastid	79.95	80.05
PGSC0003DMT400033102	Potato	cytosol	75.09	76.24
AT2G41620.1	Thale cress	nucleus	74.04	74.22
Bra016924.1-P	Field mustard	cytosol	73.46	73.46
CDY14781	Canola	cytosol	73.35	73.35
CDY06913	Canola	cytosol	73.23	73.23
CDY06112	Canola	cytosol	72.07	72.07
Bra007321.1-P	Field mustard	cytosol	71.84	71.93
AT3G57350.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	71.49	71.74
GSMUA_Achr2P04240_001	Banana	cytosol	69.64	71.72
PGSC0003DMT400077824	Potato	cytosol	14.95	71.67
CDX72047	Canola	cytosol	71.38	71.46
Os03t0349000-01	Rice	cytosol	69.64	69.08
HORVU5Hr1G021240.1	Barley	cytosol	69.06	68.66
TraesCS4A01G141000.3	Wheat	cytosol	68.71	68.32
TraesCS4B01G153500.3	Wheat	cytosol	68.71	68.32
TraesCS4D01G154300.3	Wheat	cytosol	68.6	68.28
Zm00001d029142_P007	Maize	cytosol	68.37	67.66
EER92274	Sorghum	cytosol	68.37	67.51
Zm00001d034299_P001	Maize	cytosol	11.24	61.39
Zm00001d046306_P001	Maize	extracellular	10.31	59.33

Protein Annotations

EntrezGene:100252000	wikigene:100252000	MapMan:23.5.1.1.3.1	ProteinID:CBI29807	ProteinID:CBI29807.3	UniProt:D7THT1
EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006606	GO:GO:0006810
GO:GO:0006913	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016043	GO:GO:0016740	GO:GO:0016758	GO:GO:0016973	GO:GO:0017056	GO:GO:0051028
GO:GO:0051292	EntrezGene:LOC100252000	wikigene:LOC100252000	InterPro:Nucleoporin_int_Nup93/Nic96	PFAM:PF04097	PANTHER:PTHR11225
TIGR:TC60826	UniParc:UPI00015CB0D1	ArrayExpress:VIT_08s0007g08940	EnsemblPlantsGene:VIT_08s0007g08940	EnsemblPlants:VIT_08s0007g08940.t01	unigene:Vvi.21802
RefSeq:XP_002284404	RefSeq:XP_002284404.1	SEG:seg	:	:	:

Description

Nuclear pore protein [Source:UniProtKB/TrEMBL;Acc:D7THT1]

Coordinates

chr8:-:22258184..22270728

Molecular Weight (calculated)

96131.1 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.243

Length

863 amino acids

Sequence
(BLAST)

001: MATDSDMSSW TDLLHSSTKL LEQAAPSAQF PPLQRNLDQL EALSKKLKSK TLRAEAPSQS VAATRLLARE GLNAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAIVSAIQEA QKDNLKSFND YMMKVMEEDW QKEKRDFLQS LSRISTLPKT NISDSSTGAT RPGQIASMIS SPQVSSGLSS MELVPLANKP
201: VLEKKTSVYA EVVKNLNSAR ERGLPFKPAT AFKGAYDSLG LETSGGKSVN MQKIWHLIQT LMGEDTAAQW NVSKKMSLVI GARRHLEWGH EKYMIDTIQS
301: HPAQAALGGV VGNLQRIHAF LRIRLRDYGV LDFDAGDARR QPPVDTTWQQ IYFCLRTGYY EEAIEVARSS RVSNQFASQL TEWITTRGMV SAEIAAVASE
401: ECDKMLRMGD RVGRAAYDKK RLLLYAIISG SRRHIDRLLR DLPTLFNTIE DFLWFKLSAV RDCPGGSSSV VLNEGLVPYS LDDLQNYLNK FEPSYYTKNG
501: KDPLVYPYVL LLSIQLLPAV LYLSKEMGVE GYNVDATHIS IVLADHGVLS EGAGVGQKLG VMDAFAEASS IIRQYGSVYL RAGDLSTALE YYAQAAAAVG
601: GGQLSWTGRG NIDQQWQRNL MLKQLLTELL LRDGGIYLLL GPRGAGEEGE LARFLTDVKA RQQFLLEASR QCQDAGLYDQ SIEIQKRIGA FSMALDTINK
701: CLSEAVCALA RGRLDGESRT AGLIQSGNEI LETYKYFPEV SLQEREHVME QQTVLRELEA ILSIHKLARV GHYLDALREV AKLPFLPLDP RAPDTTPDVF
801: QNLSPHVQAC VPDLLKIALS CLDYVTDTDG SLRALRTKIA NFLANNLNRN WPRDLYEKVA RTL

Best Arabidopsis Sequence Match ( AT2G41620.1 )
(BLAST)

001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F

Arabidopsis Description

NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.