CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029142_P007	Maize	cytosol	96.34	96.56
Os03t0349000-01	Rice	cytosol	90.5	90.92
TraesCS4D01G154300.3	Wheat	cytosol	88.22	88.93
TraesCS4A01G141000.3	Wheat	cytosol	88.22	88.82
HORVU5Hr1G021240.1	Barley	cytosol	88.22	88.82
TraesCS4B01G153500.3	Wheat	cytosol	87.99	88.59
Zm00001d034299_P001	Maize	cytosol	15.9	87.97
Zm00001d046306_P001	Maize	extracellular	14.42	84.0
GSMUA_Achr2P04240_001	Banana	cytosol	73.46	76.61
PGSC0003DMT400077823	Potato	cytosol	10.18	71.77
VIT_08s0007g08940.t01	Wine grape	cytosol	67.51	68.37
KRH09759	Soybean	cytosol, endoplasmic reticulum, nucleus	65.22	66.2
KRH23559	Soybean	nucleus	64.87	65.85
Solyc04g016240.2.1	Tomato	cytosol, nucleus, plastid	63.39	64.27
PGSC0003DMT400033102	Potato	cytosol	59.95	61.65
AT2G41620.1	Thale cress	nucleus	60.53	61.44
CDY14781	Canola	cytosol	60.3	61.07
CDY06913	Canola	cytosol	60.3	61.07
Bra016924.1-P	Field mustard	cytosol	60.3	61.07
PGSC0003DMT400077824	Potato	cytosol	12.36	60.0
Bra007321.1-P	Field mustard	cytosol	59.04	59.86
CDY06112	Canola	cytosol	58.92	59.68
AT3G57350.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	58.7	59.65
CDX72047	Canola	cytosol	58.7	59.51

Protein Annotations

MapMan:23.5.1.1.3.1	EntrezGene:8082655	UniProt:C5WZT7	EnsemblPlants:EER92274	ProteinID:EER92274	ProteinID:EER92274.1
GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016973	GO:GO:0017056
GO:GO:0051028	GO:GO:0051292	InterPro:Nucleoporin_int_Nup93/Nic96	PFAM:PF04097	PANTHER:PTHR11225	EnsemblPlantsGene:SORBI_3001G373000
unigene:Sbi.17306	UniParc:UPI0001A8225D	RefSeq:XP_002465276.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:66094494..66102933

Molecular Weight (calculated)

96602.8 Da

IEP (calculated)

7.150

GRAVY (calculated)

-0.257

Length

874 amino acids

Sequence
(BLAST)

001: MAGVGGSGSG GGAGGDAEMG GWTGLLHSST KLLEQAAPTP HFPPLQRNLD QLEALSTKLK AKTIRAEAPS QSLSATRLLA REGINAEQLA RDLKSFELKT
101: TFEDVFPSEA TTVEEYLQQL HEMAIVSSIQ EAQKDNLRSF NNYMMQVLED DWQKEKRDFL QSLSRLSTLP KRNTNLSTSG LARPALMPPS TSNLHAPSGL
201: PSAEVMPIPN KTIIEKKSSV YAGVVRDLND ARGRSLPFNP ATAFRSAYES LSVDAVGTKS VTMQKVWHLI QALVGEGSTH RNGSRKMSLV AGARRHLEWG
301: HEKYILDTIS SHPALAALGG SVGNLQKIRA FLRVRLRDQG VLDFDATDLR RQPPVDTTWQ QIYFCLRTGY YDEARQVAQS SRTAYNFAPL LADWISTNGA
401: VSPETALAAS EECDKMLRMG DRPGRPGYDR KKLLLYAIIC GCRRQIERLL KDLPTLFNTI EDFLWFKLSA LREYTNASSS NLMNEGLVPY TLDDLQSYLN
501: KFEPSYYTKS GKDPLVYPYI LFLSIQLLPA ILYLSKEVGE DGYHVDAVHI SIALADHSVL PDGIGSGQKI GVMDACAEAA SIIRQYGSIY LRNGNIDLAL
601: EYYAQAAAAM GGGELSWMGE GQADKQRQRS LMLKQLLTEI LLRDGGIQLL LGPNGMGEEG ELKKYMMDWR SRQQFLLEAA HRCQEAGLYD KAVEIHKRVG
701: AFAMALQTIN KCLSDAVCAM ARSMLDGESH AAALIHSGNE ILETARYSSE ASTQEKDLIS EQQTVLRQLE AILHIYRLAR AGQTVDALRE TIRLPFLHLG
801: TQAPNVTVDI FRNLSPHVQA CVPDLLKVAL NCIDNVRDTD GTLRAVKSKI ANLVASNMSR NWPQDLYQKV AQCI

Best Arabidopsis Sequence Match ( AT2G41620.1 )
(BLAST)

001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F

Arabidopsis Description

NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.