Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016924.1-P | Field mustard | cytosol | 93.84 | 93.63 |
| CDY14781 | Canola | cytosol | 93.84 | 93.63 |
| CDY06913 | Canola | cytosol | 93.61 | 93.4 |
| AT3G57350.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 84.79 | 84.88 |
| VIT_08s0007g08940.t01 | Wine grape | cytosol | 74.22 | 74.04 |
| KRH23559 | Soybean | nucleus | 73.17 | 73.17 |
| KRH09759 | Soybean | cytosol, endoplasmic reticulum, nucleus | 72.94 | 72.94 |
| Solyc04g016240.2.1 | Tomato | cytosol, nucleus, plastid | 72.01 | 71.93 |
| PGSC0003DMT400077823 | Potato | cytosol | 9.99 | 69.35 |
| PGSC0003DMT400033102 | Potato | cytosol | 67.48 | 68.35 |
| GSMUA_Achr2P04240_001 | Banana | cytosol | 62.02 | 63.72 |
| PGSC0003DMT400077824 | Potato | cytosol | 13.24 | 63.33 |
| Os03t0349000-01 | Rice | cytosol | 62.37 | 61.72 |
| Zm00001d029142_P007 | Maize | cytosol | 61.67 | 60.89 |
| HORVU5Hr1G021240.1 | Barley | cytosol | 61.09 | 60.6 |
| EER92274 | Sorghum | cytosol | 61.44 | 60.53 |
| TraesCS4A01G141000.3 | Wheat | cytosol | 60.86 | 60.37 |
| TraesCS4D01G154300.3 | Wheat | cytosol | 60.74 | 60.32 |
| TraesCS4B01G153500.3 | Wheat | cytosol | 60.74 | 60.25 |
| Zm00001d034299_P001 | Maize | cytosol | 9.18 | 50.0 |
| Zm00001d046306_P001 | Maize | extracellular | 8.25 | 47.33 |
Protein Annotations
| MapMan:23.5.1.1.3.1 | EntrezGene:818760 | UniProt:A0A178VRC1 | ProteinID:AAB84345.2 | ProteinID:AEC10008.1 | ArrayExpress:AT2G41620 |
| EnsemblPlantsGene:AT2G41620 | RefSeq:AT2G41620 | TAIR:AT2G41620 | RefSeq:AT2G41620-TAIR-G | EnsemblPlants:AT2G41620.1 | TAIR:AT2G41620.1 |
| EMBL:AY034907 | EMBL:AY113905 | Unigene:At.19154 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 |
| GO:GO:0005643 | GO:GO:0005730 | GO:GO:0006606 | GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016973 | GO:GO:0017056 | GO:GO:0051028 | GO:GO:0051292 | RefSeq:NP_565951.1 | InterPro:Nucleoporin_int_Nup93/Nic96 |
| UniProt:O22224 | ProteinID:OAP08899.1 | PFAM:PF04097 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR11225 | UniParc:UPI00000017C5 | SEG:seg | : | : |
Description
NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
Coordinates
chr2:-:17347304..17355103
Molecular Weight (calculated)
96620.7 Da
IEP (calculated)
7.185
GRAVY (calculated)
-0.337
Length
861 amino acids
Sequence
(BLAST)
(BLAST)
001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.