CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23559	Soybean	nucleus	96.52	96.52
VIT_08s0007g08940.t01	Wine grape	cytosol	82.23	82.04
PGSC0003DMT400077823	Potato	cytosol	11.61	80.65
Solyc04g016240.2.1	Tomato	cytosol, nucleus, plastid	77.12	77.03
PGSC0003DMT400033102	Potato	cytosol	72.01	72.94
AT2G41620.1	Thale cress	nucleus	72.94	72.94
Bra016924.1-P	Field mustard	cytosol	72.36	72.19
CDY14781	Canola	cytosol	72.24	72.07
CDY06913	Canola	cytosol	72.13	71.96
CDY06112	Canola	cytosol	71.43	71.26
AT3G57350.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	70.96	71.05
Bra007321.1-P	Field mustard	cytosol	71.08	71.0
CDX72047	Canola	cytosol	71.08	71.0
GSMUA_Achr2P04240_001	Banana	cytosol	67.6	69.45
PGSC0003DMT400077824	Potato	cytosol	14.29	68.33
Os03t0349000-01	Rice	cytosol	66.78	66.09
HORVU5Hr1G021240.1	Barley	cytosol	66.32	65.78
TraesCS4A01G141000.3	Wheat	cytosol	65.97	65.44
TraesCS4B01G153500.3	Wheat	cytosol	65.97	65.44
TraesCS4D01G154300.3	Wheat	cytosol	65.74	65.28
EER92274	Sorghum	cytosol	66.2	65.22
Zm00001d029142_P007	Maize	cytosol	65.85	65.02
Zm00001d034299_P001	Maize	cytosol	10.45	56.96
Zm00001d046306_P001	Maize	extracellular	9.87	56.67

Protein Annotations

EntrezGene:100777660	MapMan:23.5.1.1.3.1	EMBL:ACUP02009109	EnsemblPlantsGene:GLYMA_15G010000	GO:GO:0003674	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015031
GO:GO:0016020	GO:GO:0016043	GO:GO:0016973	GO:GO:0017056	GO:GO:0051028	GO:GO:0051292
UniProt:I1MCH7	EnsemblPlants:KRH09759	ProteinID:KRH09759	ProteinID:KRH09759.1	InterPro:Nucleoporin_int_Nup93/Nic96	PFAM:PF04097
PANTHER:PTHR11225	UniParc:UPI000233B2DC	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:767345..776011

Molecular Weight (calculated)

95746.8 Da

IEP (calculated)

6.834

GRAVY (calculated)

-0.246

Length

861 amino acids

Sequence
(BLAST)

001: MANEDLGSWT DLLHSSTKLL EQAAPSAQFP PLQRNLDQLE ALSKKLKSKT IRTEAPSQSI AATRLLAREG INAEQLARDL KSFELKTTFE DVFPVEATSV
101: EEYLQQVHEM AMVSAVQEAQ KDNLRSFNDY MMKVLEEDWQ KEKRDFLQSL SRISTLPRTN IAANSNVGTL PGQLAFVSST SQVSSGMPSM EIVPLTGRPI
201: VEKKASVYAE VVKKLNKARE SGSPFKPAAA FKGAYENLGI DASGGKSVTM RKIWHLVQML MGEESAVQRV SKRMSLIIGA RRHLEWGHEK YIMDTIQSHP
301: AQAALGGGVG NLQRIRAFLR IRLRDYGVLD FDAGDARRQP PVDTTWQQIY FCLRSGYYDE ARNVAQSSRA SHQFAPLLTE WINKGGMVPE EIAAAASEEC
401: ERMLRTGDRV GRTAYDKKKL LLYAIISGSR RHIDRLLRDQ PSLFSTIEDF LWFKLSAVRD CPSGPSSIVL SDGLIPYSLD DLQSYLNKFE PSYYTKNGKD
501: PLVYPYILLL SIQLLPAVLY LSKEAGDEGY NIDAAHLSIV LADHGVLSEG AGSGQKLGVM DAYAEVSTII RQYGSMYLRL GDLQMALEYY AQAAAAVGGG
601: QLSWTGRGNV DQQRQRNLML KQLLTELLLR DGGIYLLLGA RGAGEEGELG RFVTDPKARQ LFLIEAACHC QEAGMYDKSI EIQKRVGSFS TALDTINKCL
701: SEAICALFRG RLDGESRTAG LIHSGNEILE TYTYYPDASL QEREHVLEQQ TVLRQLESIL SIHKLVRLGH YVDALREVAK LPFIPLDPRG PDIAVDVLEN
801: LSPHVQACIP DLLKAALTCL DNVTDSDGSL RALRAKIASF IANNLKRNWP RDLYESVAQR L

Best Arabidopsis Sequence Match ( AT2G41620.1 )
(BLAST)

001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F

Arabidopsis Description

NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.