Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06112 | Canola | cytosol | 98.84 | 98.73 |
| AT3G57350.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 86.89 | 87.09 |
| Bra016924.1-P | Field mustard | cytosol | 84.8 | 84.7 |
| VIT_08s0007g08940.t01 | Wine grape | cytosol | 71.93 | 71.84 |
| KRH23559 | Soybean | nucleus | 71.35 | 71.43 |
| KRH09759 | Soybean | cytosol, endoplasmic reticulum, nucleus | 71.0 | 71.08 |
| PGSC0003DMT400077823 | Potato | cytosol | 10.21 | 70.97 |
| Solyc04g016240.2.1 | Tomato | cytosol, nucleus, plastid | 70.53 | 70.53 |
| PGSC0003DMT400033102 | Potato | cytosol | 66.36 | 67.29 |
| PGSC0003DMT400077824 | Potato | cytosol | 13.46 | 64.44 |
| GSMUA_Achr2P04240_001 | Banana | cytosol | 59.74 | 61.46 |
| Os03t0349000-01 | Rice | cytosol | 60.79 | 60.23 |
| TraesCS4A01G141000.3 | Wheat | cytosol | 60.56 | 60.14 |
| TraesCS4B01G153500.3 | Wheat | cytosol | 60.21 | 59.79 |
| TraesCS4D01G154300.3 | Wheat | cytosol | 60.09 | 59.75 |
| HORVU5Hr1G021240.1 | Barley | cytosol | 60.09 | 59.68 |
| Zm00001d029142_P007 | Maize | cytosol | 60.32 | 59.63 |
| EER92274 | Sorghum | cytosol | 59.86 | 59.04 |
| Zm00001d046306_P001 | Maize | extracellular | 8.0 | 46.0 |
| Zm00001d034299_P001 | Maize | cytosol | 8.24 | 44.94 |
Protein Annotations
| MapMan:23.5.1.1.3.1 | EnsemblPlantsGene:Bra007321 | EnsemblPlants:Bra007321.1 | EnsemblPlants:Bra007321.1-P | GO:GO:0003674 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 |
| GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0017056 |
| GO:GO:0051028 | UniProt:M4CSX9 | InterPro:Nucleoporin_int_Nup93/Nic96 | PFAM:PF04097 | PANTHER:PTHR11225 | UniParc:UPI0002542CE3 |
| SEG:seg | : | : | : | : | : |
Description
AT2G41620 (E=0.0) | nucleoporin interacting component family protein
Coordinates
chrA09:-:28574391..28579075
Molecular Weight (calculated)
96774.5 Da
IEP (calculated)
7.173
GRAVY (calculated)
-0.360
Length
862 amino acids
Sequence
(BLAST)
(BLAST)
001: MANDQEMSGW TDLLHSSTKL LDQAAPSSQF PPLQRNLDQL EALSRKLKAK TLRSEAPSQS IAATRLLARE GINAEQLSRD LRSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMLKVLEEDC RKEKRDFLQS RSKLSIIPKT KMIDTSRDTH AGQLVPVTSS PQVSSNTGTE LVSLANKPIH
201: EKKAHVYAEV VKKLNSSRER GLPFKPATSF KDAYGSLGID LTRGKSVNVQ KLWQLIQAMT GEDSAVHKGV SKRMSLVVGA RRHLECGHQK HIMDTIQSHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGILD FDSGDARRQP PVDTTWQQIY FCLRSGYYEE AREIAQSSRS SQQQFAPLLI EWITTGGTVT TNTAAIASEE
401: CEKLFRLGDR LGQTTYDKKK LLLYTIISGS RRQIDRILRE FSTLFNTIED FLWFKLSCIR DVASGSSSLV FNDGLVPYSL DDLQAYLNKF EPAYYTKNGK
501: DPLVYPYVLL LSIQLLPAIM HMSQEAGDEG YNIDAVHIAI SLVDHSVLSE GSGTGHKLSV MDANAEASSL IRQYGSMYLH HGDMQMTLEY YAQAAIAVGG
601: GQLVWSGRSN VDQQRQRNLM LKQLLTEILL REGGIYFLLG ARGSGEEGEL GRFFPDSKSR QQFLIEAANQ CQDAGLFEKS IEIQKRVGAY AAALETINKC
701: LSEAICSLLR GRSDGESRTA GLVLSGNEIL DTYKYYPEVC PQERERVMEQ ETILRELEAI LSIHKLARLG NHLDALKEAA KLPFLHLDPR LSDTTPDEFQ
801: RASYYFKTCV PDLLKVVLTC LDNVPDRDGS IRVMRSKIAG FLASNTHQNW PRDLYEKVAR SF
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMLKVLEEDC RKEKRDFLQS RSKLSIIPKT KMIDTSRDTH AGQLVPVTSS PQVSSNTGTE LVSLANKPIH
201: EKKAHVYAEV VKKLNSSRER GLPFKPATSF KDAYGSLGID LTRGKSVNVQ KLWQLIQAMT GEDSAVHKGV SKRMSLVVGA RRHLECGHQK HIMDTIQSHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGILD FDSGDARRQP PVDTTWQQIY FCLRSGYYEE AREIAQSSRS SQQQFAPLLI EWITTGGTVT TNTAAIASEE
401: CEKLFRLGDR LGQTTYDKKK LLLYTIISGS RRQIDRILRE FSTLFNTIED FLWFKLSCIR DVASGSSSLV FNDGLVPYSL DDLQAYLNKF EPAYYTKNGK
501: DPLVYPYVLL LSIQLLPAIM HMSQEAGDEG YNIDAVHIAI SLVDHSVLSE GSGTGHKLSV MDANAEASSL IRQYGSMYLH HGDMQMTLEY YAQAAIAVGG
601: GQLVWSGRSN VDQQRQRNLM LKQLLTEILL REGGIYFLLG ARGSGEEGEL GRFFPDSKSR QQFLIEAANQ CQDAGLFEKS IEIQKRVGAY AAALETINKC
701: LSEAICSLLR GRSDGESRTA GLVLSGNEIL DTYKYYPEVC PQERERVMEQ ETILRELEAI LSIHKLARLG NHLDALKEAA KLPFLHLDPR LSDTTPDEFQ
801: RASYYFKTCV PDLLKVVLTC LDNVPDRDGS IRVMRSKIAG FLASNTHQNW PRDLYEKVAR SF
001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
Arabidopsis Description
NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.