Factsheet for PGSC0003DMT400077823

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033102	Potato	cytosol	98.39	14.35
Solyc04g016240.2.1	Tomato	cytosol, nucleus, plastid	95.97	13.81
VIT_08s0007g08940.t01	Wine grape	cytosol	81.45	11.7
KRH09759	Soybean	cytosol, endoplasmic reticulum, nucleus	80.65	11.61
KRH23559	Soybean	nucleus	79.84	11.5
TraesCS4D01G154300.3	Wheat	cytosol	73.39	10.5
TraesCS4A01G141000.3	Wheat	cytosol	73.39	10.48
Bra016924.1-P	Field mustard	cytosol	72.58	10.43
CDY06913	Canola	cytosol	72.58	10.43
CDY14781	Canola	cytosol	72.58	10.43
TraesCS4B01G153500.3	Wheat	cytosol	72.58	10.37
Os03t0349000-01	Rice	cytosol	72.58	10.34
CDX72047	Canola	cytosol	71.77	10.32
CDY06112	Canola	cytosol	71.77	10.31
GSMUA_Achr2P04240_001	Banana	cytosol	69.35	10.26
AT3G57350.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	70.97	10.23
Bra007321.1-P	Field mustard	cytosol	70.97	10.21
Zm00001d029142_P007	Maize	cytosol	71.77	10.21
EER92274	Sorghum	cytosol	71.77	10.18
HORVU5Hr1G021240.1	Barley	cytosol	70.97	10.14
AT2G41620.1	Thale cress	nucleus	69.35	9.99
PGSC0003DMT400077824	Potato	cytosol	0.0	0.0
Zm00001d034299_P001	Maize	cytosol	0.0	0.0
Zm00001d046306_P001	Maize	extracellular	0.0	0.0

Protein Annotations

MapMan:23.5.1.1.3.1	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0017056	GO:GO:0051028	UniProt:M1CYY7	InterPro:Nucleoporin_int_Nup93/Nic96
PFAM:PF04097	EnsemblPlantsGene:PGSC0003DMG401030272	PGSC:PGSC0003DMG401030272	EnsemblPlants:PGSC0003DMT400077823	PANTHER:PTHR11225	UniParc:UPI0002954D3A

Description

Nuclear pore complex protein nup93 [Source:PGSC_GENE;Acc:PGSC0003DMG401030272]

Coordinates

chr00:+:36101957..36102933

Molecular Weight (calculated)

13717.6 Da

IEP (calculated)

10.107

GRAVY (calculated)

-0.193

Length

124 amino acids

Sequence
(BLAST)

001: PATAFKCALE SLGLNASGGK SVGIQKIWHL LSSLMGEDST VQHNVSKKMS LVIGARRHLE WGHEKYIMET IQAHPAQAAL GGAVGNLQRI RAFLRIRLRD
101: YGVLDFDAVD ARRQPPIDTT WQQV

Best Arabidopsis Sequence Match ( AT3G57350.1 )
(BLAST)

001: MANDQEMSGW TDLLHSSTKL LEQAAPSSQF PPLQRNLDQL EALSRKLKAK TLRNEAPSQS IAATRLLARE GINADQLSRD LKSFELKTTF EDVFPAETTS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFNN YMLKVLEEDC IKEKRDFLHS LSKTSMLPKT KMINSSRGSH AGSLVPLSPQ VSSKPGTELV SMTNKPIHEK
201: KAYVYAEVVK KLNSARERGL PFKLATLFNG AYESLEIDLT RGKSVNMQKL WQLIQGMTGE ESAVQHGVSK RMALVIGARR HLECGHGKHI MDTIQSHPTQ
301: AALGGSVGNL QRIRAFLRIR LRDYGSLDFD SVDARRQPPV DTTWQQIYFC LRTGYYEEAR EIAQSSRSSQ QQFAPLLTEW ITTGGTVAAQ TAATASEECE
401: KLLRMGDRFG QTTYDKKKLL LYTIISGSRR QIDRIMRDFS TLFNTIEDFL WFKLSCVRDV AGGSSSMIVN DGLVPYSLDD LQAYLNKFEP SYYTKNGKDP
501: LVYPYVLLLS IQLLPAIMHM SNEAGDEGYN IDAVHVAISL VDHSILSEGS GTGRKLSVMD ANAEASSMIR QYGSMYLHHG DLQMTLEYYA QAAIAVGGGQ
601: QAWSGRSNVD QQRQRNLMLK QLLTEILSQE DGIHFLLGAR GSGEEGELGR FLPDIKLRQQ FLIEAAHQFQ EAGLYDKSIE LQKRVGAFSS ALETINKCLS
701: EAICSLVRGR PDGESRTEGL VLSGNDILNS YKYHPDVSAQ ERHLVMEQET ILRELEAILS IHKLARLNKH LDAIREVAKL PFLHLDPRQP DTTSDEFQKA
801: SSYFQTCVPD LLKVALTCLD NVADTDGSIR GMRSKIAGFL ASNTQRNWPR DLYEKIARSF

Arabidopsis Description

NUP93BNuclear pore complex protein NUP93B [Source:UniProtKB/Swiss-Prot;Acc:F4J284]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.