Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G021240.1 | Barley | cytosol | 90.92 | 91.13 |
| TraesCS4D01G154300.3 | Wheat | cytosol | 90.8 | 91.12 |
| TraesCS4B01G153500.3 | Wheat | cytosol | 90.8 | 91.01 |
| TraesCS4A01G141000.3 | Wheat | cytosol | 90.8 | 91.01 |
| Zm00001d029142_P007 | Maize | cytosol | 90.8 | 90.6 |
| EER92274 | Sorghum | cytosol | 90.92 | 90.5 |
| Zm00001d034299_P001 | Maize | cytosol | 15.63 | 86.08 |
| Zm00001d046306_P001 | Maize | extracellular | 14.02 | 81.33 |
| GSMUA_Achr2P04240_001 | Banana | cytosol | 73.79 | 76.61 |
| PGSC0003DMT400077823 | Potato | cytosol | 10.34 | 72.58 |
| VIT_08s0007g08940.t01 | Wine grape | cytosol | 69.08 | 69.64 |
| KRH23559 | Soybean | nucleus | 66.21 | 66.9 |
| KRH09759 | Soybean | cytosol, endoplasmic reticulum, nucleus | 66.09 | 66.78 |
| Solyc04g016240.2.1 | Tomato | cytosol, nucleus, plastid | 65.29 | 65.89 |
| PGSC0003DMT400033102 | Potato | cytosol | 61.38 | 62.82 |
| AT2G41620.1 | Thale cress | nucleus | 61.72 | 62.37 |
| CDY06913 | Canola | cytosol | 61.61 | 62.11 |
| Bra016924.1-P | Field mustard | cytosol | 61.61 | 62.11 |
| CDY14781 | Canola | cytosol | 61.49 | 61.99 |
| AT3G57350.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 60.46 | 61.16 |
| CDY06112 | Canola | cytosol | 60.46 | 60.95 |
| CDX72047 | Canola | cytosol | 60.23 | 60.79 |
| Bra007321.1-P | Field mustard | cytosol | 60.23 | 60.79 |
| PGSC0003DMT400077824 | Potato | cytosol | 12.53 | 60.56 |
Protein Annotations
| MapMan:23.5.1.1.3.1 | EntrezGene:4332834 | ProteinID:ABF95921.1 | EMBL:AK099999 | ProteinID:BAF12020.1 | ProteinID:BAS84185.1 |
| ProteinID:EEE59055.1 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0006606 | GO:GO:0006810 | GO:GO:0006913 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016973 | GO:GO:0017056 | GO:GO:0051028 | GO:GO:0051292 | InterPro:Nucleoporin_int_Nup93/Nic96 | EnsemblPlantsGene:Os03g0349000 |
| EnsemblPlants:Os03t0349000-01 | PFAM:PF04097 | PANTHER:PTHR11225 | UniProt:Q10LH9 | UniParc:UPI0000DB4247 | RefSeq:XP_015632533.1 |
| SEG:seg | : | : | : | : | : |
Description
Nucleoporin interacting component family protein. (Os03t0349000-01)
Coordinates
chr3:-:13100324..13109340
Molecular Weight (calculated)
96556.9 Da
IEP (calculated)
7.173
GRAVY (calculated)
-0.247
Length
870 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVGGSSSG GGDVEMGGWS ELLHSSTKLL EQAAPTPHFP PLQRNLDQLE VLSTKLKAKT VRAEAPVQSL SATRLLAREG INAEQLARDL KSFELKTTFE
101: DVFPSEATTV EEYLQQLHEM AIVSSIQEAQ KDNLRSFNNY MMQVLEDDWQ KEKRDFLQSL SRLSTLPKRN TNLMASGISR PALMPSSASS PQSSSGLPSK
201: EVMPIPNKTI IENKSSVYAA VVRDLNDARG RSLPFGPATA FRAAYESLSV GAIGTKSVTM HKVWHLIQAL VGEGSTHRNI SRKMSLVIGA RRHLEWGHEK
301: YILETINSHP ALAALGGSVG NLQKIRAFLR VRLRDHGVLD FDATDLRRQP PVDTTWQQIY FCLRTGYYDE ARQVAQSSRA AFNFAPLLVE WITTNGAVSP
401: ETALTASEEC DKMLRMGDRP GRPGYDRKKL LLYAMICGCR RQIDRLLKDL PTLFNTIEDF LWFKLSALRE YTSASSSNVS NEGLVPYTLE DLQSYLNKFE
501: PSYYTKNGKD PLVYPYVLLL SIQLLPAILY LSKEVGEEGY HVDAVHISIA LSDHGVLPDG VGSGQKMGIM DACAEAASII RQYGSIYLRN GNLDLALEYY
601: AQSAAAMGGG EVSWIGRGNA DQQRQRNLML KQLLTEILLR DGGIQLLLGP SGMGEEGELK KYMMDWRSRQ QFLLEAAHQC HEAGLYDKSV EIHKRVGAFA
701: MALQTINKCL SDAICAMARS MLDGESRAAA LIHSGNEIME TARYSEASVQ DKDLISEQQT VLRQLEAILH IYRLARAGQT LDALRETIKL PFLHLDPQAP
801: NVTVDVFRNL SPHVQACVPD LLKVALNCMD NVRDTDGTLR AVKSKIANLV ASNMSRNWPQ DLYQKVAQCI
101: DVFPSEATTV EEYLQQLHEM AIVSSIQEAQ KDNLRSFNNY MMQVLEDDWQ KEKRDFLQSL SRLSTLPKRN TNLMASGISR PALMPSSASS PQSSSGLPSK
201: EVMPIPNKTI IENKSSVYAA VVRDLNDARG RSLPFGPATA FRAAYESLSV GAIGTKSVTM HKVWHLIQAL VGEGSTHRNI SRKMSLVIGA RRHLEWGHEK
301: YILETINSHP ALAALGGSVG NLQKIRAFLR VRLRDHGVLD FDATDLRRQP PVDTTWQQIY FCLRTGYYDE ARQVAQSSRA AFNFAPLLVE WITTNGAVSP
401: ETALTASEEC DKMLRMGDRP GRPGYDRKKL LLYAMICGCR RQIDRLLKDL PTLFNTIEDF LWFKLSALRE YTSASSSNVS NEGLVPYTLE DLQSYLNKFE
501: PSYYTKNGKD PLVYPYVLLL SIQLLPAILY LSKEVGEEGY HVDAVHISIA LSDHGVLPDG VGSGQKMGIM DACAEAASII RQYGSIYLRN GNLDLALEYY
601: AQSAAAMGGG EVSWIGRGNA DQQRQRNLML KQLLTEILLR DGGIQLLLGP SGMGEEGELK KYMMDWRSRQ QFLLEAAHQC HEAGLYDKSV EIHKRVGAFA
701: MALQTINKCL SDAICAMARS MLDGESRAAA LIHSGNEIME TARYSEASVQ DKDLISEQQT VLRQLEAILH IYRLARAGQT LDALRETIKL PFLHLDPQAP
801: NVTVDVFRNL SPHVQACVPD LLKVALNCMD NVRDTDGTLR AVKSKIANLV ASNMSRNWPQ DLYQKVAQCI
001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
Arabidopsis Description
NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.