CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09759	Soybean	cytosol, endoplasmic reticulum, nucleus	96.52	96.52
VIT_08s0007g08940.t01	Wine grape	cytosol	82.0	81.81
PGSC0003DMT400077823	Potato	cytosol	11.5	79.84
Solyc04g016240.2.1	Tomato	cytosol, nucleus, plastid	76.89	76.8
AT2G41620.1	Thale cress	nucleus	73.17	73.17
PGSC0003DMT400033102	Potato	cytosol	72.01	72.94
Bra016924.1-P	Field mustard	cytosol	72.59	72.42
CDY06913	Canola	cytosol	72.47	72.31
CDY14781	Canola	cytosol	72.47	72.31
CDY06112	Canola	cytosol	71.78	71.61
Bra007321.1-P	Field mustard	cytosol	71.43	71.35
CDX72047	Canola	cytosol	71.43	71.35
AT3G57350.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	70.96	71.05
GSMUA_Achr2P04240_001	Banana	cytosol	67.6	69.45
PGSC0003DMT400077824	Potato	cytosol	14.29	68.33
Os03t0349000-01	Rice	cytosol	66.9	66.21
HORVU5Hr1G021240.1	Barley	cytosol	65.85	65.32
TraesCS4A01G141000.3	Wheat	cytosol	65.62	65.09
TraesCS4B01G153500.3	Wheat	cytosol	65.51	64.98
EER92274	Sorghum	cytosol	65.85	64.87
TraesCS4D01G154300.3	Wheat	cytosol	65.27	64.82
Zm00001d029142_P007	Maize	cytosol	65.51	64.68
Zm00001d034299_P001	Maize	cytosol	10.57	57.59
Zm00001d046306_P001	Maize	extracellular	9.87	56.67

Protein Annotations

EntrezGene:100782831	MapMan:23.5.1.1.3.1	EMBL:ACUP02008474	EnsemblPlantsGene:GLYMA_13G363900	GO:GO:0003674	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016973	GO:GO:0017056	GO:GO:0051028
GO:GO:0051292	UniProt:I1M5S3	EnsemblPlants:KRH23559	ProteinID:KRH23559	ProteinID:KRH23559.1	InterPro:Nucleoporin_int_Nup93/Nic96
PFAM:PF04097	PANTHER:PTHR11225	UniParc:UPI000233B6B3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:45047225..45055770

Molecular Weight (calculated)

95904.9 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.262

Length

861 amino acids

Sequence
(BLAST)

001: MANEELGSWT DLLHSSTKLL EQAAPSAQFP PLQRNLDQLE ALSKKLKSKT VRTEAPSQSI AATRLLAREG INAEQLARDL KSFELKTTFE DVFPVEATSV
101: EEYLQQVHEM AMVSAVQEAQ KDNLRSFNDY MMKVLEEDWQ KEKRDFLQSL SRISTLPRTN IAANSNVGTL PGQIVSVSST SQVSSGMPSM EIVSLTGRPI
201: VEKKASVYAE VVKKLNKARE AGSPFKPAAA FKGAYENLGI DASGGKSVTM RKIWHLVQML MGEDSAVQCV SKRMSLIIGA RRHLEWGHEK YIMDTIQSHP
301: AQAALGGGVG NLQRIRAFLR IRLRDYGVLD FDAGDARRQP PVDTTWQQIY FCLRSGYYDE ARNVAQSSRT SHQFAPLLTE WINKGGMVPE EIATAASEEC
401: ERMLRTGDRV GRTAYDKKKL LLYAIISGSR RHIDRLLRDQ PSLFSTIEDF LWFKLSAVRD CPSGPSSIVL SDGLIPYSLD DLQSYLNKFE PSYYTKNGKD
501: PLVYPYILLL SIQLLPAVLY LSKEAGDEGY NIDAAHLSIV LADHGVLSEG AGSGQKLGVM DAYAEVSTII RQYGSMYLRL GDLQMALEYF AQAAAAVGGG
601: ELSWTGRGNV DQQRQRNLMV KQLLTELLLR DGGIYLLLGA RGTGEEGELG RFVTDPKARQ QFLIEAACQC QEAGMYDKSI EIQKRVGSFS TALDTINKCL
701: SEAICALFRG RLDGESRTAG LIHSGNEILE TYSYYPDVRL QEREHVFDQQ TVLRQLESIL SIHKLARLGH YLDALREVAK LPFLPLDPRG PDIAVDVLEN
801: LSPHVQACIP DLLKTALTCL DNVTDSDGSL RALRAKIASF IANNLRRNWP RDLYERVAQR L

Best Arabidopsis Sequence Match ( AT2G41620.1 )
(BLAST)

001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F

Arabidopsis Description

NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.