CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06913	Canola	cytosol	98.96	98.96
Bra016924.1-P	Field mustard	cytosol	98.84	98.84
AT2G41620.1	Thale cress	nucleus	93.63	93.84
CDY06112	Canola	cytosol	85.28	85.28
CDX72047	Canola	cytosol	84.47	84.57
VIT_08s0007g08940.t01	Wine grape	cytosol	73.35	73.35
PGSC0003DMT400077823	Potato	cytosol	10.43	72.58
KRH23559	Soybean	nucleus	72.31	72.47
KRH09759	Soybean	cytosol, endoplasmic reticulum, nucleus	72.07	72.24
Solyc04g016240.2.1	Tomato	cytosol, nucleus, plastid	71.26	71.35
PGSC0003DMT400033102	Potato	cytosol	66.86	67.88
GSMUA_Achr2P04240_001	Banana	cytosol	61.99	63.84
PGSC0003DMT400077824	Potato	cytosol	13.21	63.33
Os03t0349000-01	Rice	cytosol	61.99	61.49
HORVU5Hr1G021240.1	Barley	cytosol	61.07	60.71
TraesCS4A01G141000.3	Wheat	cytosol	60.95	60.6
TraesCS4D01G154300.3	Wheat	cytosol	60.83	60.55
TraesCS4B01G153500.3	Wheat	cytosol	60.83	60.48
Zm00001d029142_P007	Maize	cytosol	61.07	60.44
EER92274	Sorghum	cytosol	61.07	60.3
Zm00001d034299_P001	Maize	cytosol	9.15	50.0
Zm00001d046306_P001	Maize	extracellular	8.46	48.67

Protein Annotations

MapMan:23.5.1.1.3.1	GO:A0A078FNQ5	UniProt:A0A078FNQ5	EnsemblPlants:CDY14781	ProteinID:CDY14781	ProteinID:CDY14781.1
GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0017056	GO:GO:0051028	EnsemblPlantsGene:GSBRNA2T00084644001	InterPro:Nucleoporin_int_Nup93/Nic96	PFAM:PF04097
PANTHER:PTHR11225	UniParc:UPI0004EE851B	SEG:seg	:	:	:

Description

BnaC04g47780DNuclear pore protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNQ5]

Coordinates

chrLK032047:-:335295..339940

Molecular Weight (calculated)

96465.4 Da

IEP (calculated)

7.144

GRAVY (calculated)

-0.342

Length

863 amino acids

Sequence
(BLAST)

001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMVDASREAN AGQLVPVASS TRGVSSTLGK ELVALANIPI
201: HEKKAYVYGE VVKKLNMSRE RGLPFKPAMS FKEAYESLGA EGTHGKSVNI QKIWQLVQAI TGEDSAVRQG VSKRMSLAIG ARRHLERGHE KHIMDTIQSH
301: PTQAALGGSV GNLQRIRAFL RIRLREYGTL DFDSPDARRQ PPVDTTWQQI YFCLRTGYYE EAKEIARSTR SSQQFAPLLT EWITKDGMVA AETAAIASEE
401: CEKMLRMGDR LGRTAYDKKK LLLYTIISGS RRQIERILRD LSTLFNTIED FLWFKLACIK DVSGASSSSV VLNDGLAPYS LDDLQTYLNK FEPSYYTKNG
501: KDPLVYPYVL LLSVQLLPAI MHLSKEAGDG GYNIDAVHIA ISLVDHSVLS EGSGTGHKLS VMDANAEASS MVRQYGSMFL HHGDLQMTVE YYAQAAVTVG
601: GGQLAWSGRS NTDQQRQRNL MLKQLLTEIL LREGGIYFLL GGRGSGEEGQ LGRFFPDSRL RQQFLIEAAH QCQEAGLYDK SIEIQKRVGA FASALETINK
701: CLSEAICSLA RGRLDGESRT SGLILAGNDI LQTYKYYPEV SLQEGERVME QETILRELEA ILSIHKLARQ GNHMDALREI AKLPFLNLDP RVPDATADVF
801: QSASPYFQTC VPDLLKVALT CLDNVPDPDG SIRAMRSKIA GFLASNTHRN WPRDLYEKVA RSF

Best Arabidopsis Sequence Match ( AT2G41620.1 )
(BLAST)

001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F

Arabidopsis Description

NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.