Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G154300.3 | Wheat | cytosol | 97.7 | 97.81 |
| TraesCS4B01G153500.3 | Wheat | cytosol | 97.58 | 97.58 |
| TraesCS4A01G141000.3 | Wheat | cytosol | 97.47 | 97.47 |
| Os03t0349000-01 | Rice | cytosol | 91.13 | 90.92 |
| Zm00001d029142_P007 | Maize | cytosol | 89.17 | 88.76 |
| EER92274 | Sorghum | cytosol | 88.82 | 88.22 |
| Zm00001d034299_P001 | Maize | cytosol | 15.67 | 86.08 |
| Zm00001d046306_P001 | Maize | extracellular | 13.82 | 80.0 |
| GSMUA_Achr2P04240_001 | Banana | cytosol | 73.04 | 75.66 |
| PGSC0003DMT400077823 | Potato | cytosol | 10.14 | 70.97 |
| VIT_08s0007g08940.t01 | Wine grape | cytosol | 68.66 | 69.06 |
| KRH09759 | Soybean | cytosol, endoplasmic reticulum, nucleus | 65.78 | 66.32 |
| KRH23559 | Soybean | nucleus | 65.32 | 65.85 |
| Solyc04g016240.2.1 | Tomato | cytosol, nucleus, plastid | 64.98 | 65.43 |
| PGSC0003DMT400033102 | Potato | cytosol | 61.29 | 62.59 |
| PGSC0003DMT400077824 | Potato | cytosol | 12.79 | 61.67 |
| Bra016924.1-P | Field mustard | cytosol | 60.83 | 61.18 |
| AT2G41620.1 | Thale cress | nucleus | 60.6 | 61.09 |
| CDY14781 | Canola | cytosol | 60.71 | 61.07 |
| CDY06913 | Canola | cytosol | 60.71 | 61.07 |
| AT3G57350.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 60.14 | 60.7 |
| CDY06112 | Canola | cytosol | 59.79 | 60.14 |
| Bra007321.1-P | Field mustard | cytosol | 59.68 | 60.09 |
| CDX72047 | Canola | cytosol | 59.45 | 59.86 |
Protein Annotations
| MapMan:23.5.1.1.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0006810 | GO:GO:0006913 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0017056 | GO:GO:0051028 | EnsemblPlantsGene:HORVU5Hr1G021240 |
| EnsemblPlants:HORVU5Hr1G021240.1 | UniProt:M0UNH5 | InterPro:Nucleoporin_int_Nup93/Nic96 | PFAM:PF04097 | PANTHER:PTHR11225 | UniParc:UPI000296EF9C |
| SEG:seg | : | : | : | : | : |
Description
Nuclear pore protein [Source:UniProtKB/TrEMBL;Acc:M0UNH5]
Coordinates
chrchr5H:-:102047819..102055651
Molecular Weight (calculated)
95994.8 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.246
Length
868 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVGADGGG DTEMGGWSEL LNTSTKLLEQ AALTPHFPAL QRNLDQLEVL STKLKAKTIR AEAPSQSLSA TRLLAREGIN AEQLTRDLKS FELKTTFEDV
101: FPSEATSVEE YLQQLHEMAI VSSIQGAQKD NLKSFNNYMM QVLEDDWQKE KRDFLQSLSR LSTLPKRNTN LAGGLSRHAL MPSSASSPQA SSGLPAEEVM
201: PIPNKTIIDS KSSVYAGVVK DLNDARGRSL PFSPATAFRA AYESLSLDAT GSKSVTMQKV WHLIQALVGE GSSHRNVSRK MSLVVGARQH LEWGYEKYII
301: ETINSQPALA ALGGSVGNLQ KIRAFLRVRL RDHGVLDFDA SDLRRQPPVD TTWQQIYFCL RTGYYDEARQ VAQSSRAAYN FAPLLAEWIT TNGAVSSETA
401: LTASEECEKM LRMGDRPGRP GYDRKKLLLY AIICGCRRQI DRLLKDLPTL FNTIEDFLWF KLSALREYSS ASSSNVVSEG LVPYTLEDLQ NYLNKFEPSY
501: YTKSGKDPLV YPYILLLSIQ SLPAILYLSK EVGEEGYHVD AVHISITLAD HGILPEGVGS GQKMGVMDAC AEAASIIRQY GSVYLRNGNL DLALEYYAQA
601: AAAMGGGEVS WIGQGNADQQ RQRSSMLKQL LTEILLRDGG IQLLLGPSGM GEEGELKKYM MDWRSRQQFL LEAAHRCQEA GLYDKSVEIH KRVGAFAMAL
701: QTVNKCLSDA VCALAHNMLD GESRAVGLIQ SGNEILETAR YSSEASVQDK DLISEQQIVL RQLEAILHIY RLARAGQTVD ALRETIKLPF LHLDPQSPNV
801: SVDVFRNLSP HVQACVPDLL KVALNCMDNV RDTDGTLRAV KSKIANLVAS NMSRNWPQDL YQKVAQCI
101: FPSEATSVEE YLQQLHEMAI VSSIQGAQKD NLKSFNNYMM QVLEDDWQKE KRDFLQSLSR LSTLPKRNTN LAGGLSRHAL MPSSASSPQA SSGLPAEEVM
201: PIPNKTIIDS KSSVYAGVVK DLNDARGRSL PFSPATAFRA AYESLSLDAT GSKSVTMQKV WHLIQALVGE GSSHRNVSRK MSLVVGARQH LEWGYEKYII
301: ETINSQPALA ALGGSVGNLQ KIRAFLRVRL RDHGVLDFDA SDLRRQPPVD TTWQQIYFCL RTGYYDEARQ VAQSSRAAYN FAPLLAEWIT TNGAVSSETA
401: LTASEECEKM LRMGDRPGRP GYDRKKLLLY AIICGCRRQI DRLLKDLPTL FNTIEDFLWF KLSALREYSS ASSSNVVSEG LVPYTLEDLQ NYLNKFEPSY
501: YTKSGKDPLV YPYILLLSIQ SLPAILYLSK EVGEEGYHVD AVHISITLAD HGILPEGVGS GQKMGVMDAC AEAASIIRQY GSVYLRNGNL DLALEYYAQA
601: AAAMGGGEVS WIGQGNADQQ RQRSSMLKQL LTEILLRDGG IQLLLGPSGM GEEGELKKYM MDWRSRQQFL LEAAHRCQEA GLYDKSVEIH KRVGAFAMAL
701: QTVNKCLSDA VCALAHNMLD GESRAVGLIQ SGNEILETAR YSSEASVQDK DLISEQQIVL RQLEAILHIY RLARAGQTVD ALRETIKLPF LHLDPQSPNV
801: SVDVFRNLSP HVQACVPDLL KVALNCMDNV RDTDGTLRAV KSKIANLVAS NMSRNWPQDL YQKVAQCI
001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
Arabidopsis Description
NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.