Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G154300.3 | Wheat | cytosol | 98.16 | 98.27 |
| TraesCS4B01G153500.3 | Wheat | cytosol | 97.81 | 97.81 |
| HORVU5Hr1G021240.1 | Barley | cytosol | 97.47 | 97.47 |
| Os03t0349000-01 | Rice | cytosol | 91.01 | 90.8 |
| Zm00001d029142_P007 | Maize | cytosol | 88.94 | 88.53 |
| EER92274 | Sorghum | cytosol | 88.82 | 88.22 |
| Zm00001d034299_P001 | Maize | cytosol | 15.32 | 84.18 |
| Zm00001d046306_P001 | Maize | extracellular | 13.82 | 80.0 |
| GSMUA_Achr2P04240_001 | Banana | cytosol | 72.58 | 75.18 |
| PGSC0003DMT400077823 | Potato | cytosol | 10.48 | 73.39 |
| VIT_08s0007g08940.t01 | Wine grape | cytosol | 68.32 | 68.71 |
| KRH09759 | Soybean | cytosol, endoplasmic reticulum, nucleus | 65.44 | 65.97 |
| KRH23559 | Soybean | nucleus | 65.09 | 65.62 |
| Solyc04g016240.2.1 | Tomato | cytosol, nucleus, plastid | 64.29 | 64.73 |
| PGSC0003DMT400033102 | Potato | cytosol | 60.94 | 62.24 |
| PGSC0003DMT400077824 | Potato | cytosol | 12.67 | 61.11 |
| Bra016924.1-P | Field mustard | cytosol | 60.71 | 61.07 |
| CDY14781 | Canola | cytosol | 60.6 | 60.95 |
| CDY06913 | Canola | cytosol | 60.6 | 60.95 |
| AT2G41620.1 | Thale cress | nucleus | 60.37 | 60.86 |
| CDY06112 | Canola | cytosol | 60.25 | 60.6 |
| AT3G57350.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 60.02 | 60.58 |
| Bra007321.1-P | Field mustard | cytosol | 60.14 | 60.56 |
| CDX72047 | Canola | cytosol | 59.91 | 60.32 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G141000.3 | EnsemblPlantsGene:TraesCS4A01G141000 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0017056 | InterPro:Nucleoporin_int_Nup93/Nic96 |
| ncoils:Coil | PANTHER:PTHR11225 | PFAM:PF04097 | SEG:seg | MapMan:23.5.1.1.3.1 | : |
Description
No Description!
Coordinates
chr4A:+:219175375..219190555
Molecular Weight (calculated)
95968.9 Da
IEP (calculated)
6.422
GRAVY (calculated)
-0.229
Length
868 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVGADGGG DTEMGGWSEL LNISTKLLEQ AAPTPHFPTL QRNLDQLEVL STKLKAKTIR AEAPSQSLSA TRLLAREGIN AEQLTRDLKS FELKTTFEDV
101: FPSEATSVEE YLQQLHEMAI VSSIQGAQKD NLQSFNNYMM QVLEDDWQKE KRDFLQSLSR LSTLPKRNTN LAGGLSRYAL MPSSASSPQA SSGLPAAEVM
201: PIPNKTIIDS KSSVYAGVVK DLNDARGRSL PFSPATAFRA AYESLSLDAT GSKSVTMQKV WHLIQALVGE GSTHKNVSRK MSLVVGARRH LEWGHEKYII
301: ETINSQPALA ALGGSVGNLQ KIRAFLRVRL RDHGVLDFDA SDLRRQPPVD TTWQQIYFCL RTGYYDEARQ VAQSSRAAYN FAPLLAEWIT TNGAVSLETA
401: LTASEECEKM LRMGDRPGRP GYDRKKLLLY AIICGCRRQI DRLLKDLPTL FNTIEDFLWF KLSALREYSS ASSSNVANEG LVPYMLEDLQ NYLNKFEPSY
501: YTKSGKDPLV YPYILLLSIQ SLPAILYLSK EVGEEGYHVD AVHISITLAD HGILPEGVGS GQKMGVMDAC AEAASIIRQY GSIYLRNGNL DLALEYYAQA
601: AAAMGGGEVS WIGQGNADQQ RQRSSMLMQL LTEILLRDGG IQLLLGPSGM GEEGELKKYM MDLRSRQQFL LEAAHRCQEA GLYDKSVEIH KRVGAFAMAL
701: QTVNKCLSDA VCALAHNMSD GESRAVALIQ SGNEILETAR YSSEASVQDK DLISEQQIVL RQLEAILHIY RLARAGQTVD ALRETIKLPF LHLDPQSSNI
801: SVDVFRNLSP HVQACVPDLL KVALNCMDNV RDTDGTLRAV KSKIANLVAS NMSRDWPQDL YQKVAQCI
101: FPSEATSVEE YLQQLHEMAI VSSIQGAQKD NLQSFNNYMM QVLEDDWQKE KRDFLQSLSR LSTLPKRNTN LAGGLSRYAL MPSSASSPQA SSGLPAAEVM
201: PIPNKTIIDS KSSVYAGVVK DLNDARGRSL PFSPATAFRA AYESLSLDAT GSKSVTMQKV WHLIQALVGE GSTHKNVSRK MSLVVGARRH LEWGHEKYII
301: ETINSQPALA ALGGSVGNLQ KIRAFLRVRL RDHGVLDFDA SDLRRQPPVD TTWQQIYFCL RTGYYDEARQ VAQSSRAAYN FAPLLAEWIT TNGAVSLETA
401: LTASEECEKM LRMGDRPGRP GYDRKKLLLY AIICGCRRQI DRLLKDLPTL FNTIEDFLWF KLSALREYSS ASSSNVANEG LVPYMLEDLQ NYLNKFEPSY
501: YTKSGKDPLV YPYILLLSIQ SLPAILYLSK EVGEEGYHVD AVHISITLAD HGILPEGVGS GQKMGVMDAC AEAASIIRQY GSIYLRNGNL DLALEYYAQA
601: AAAMGGGEVS WIGQGNADQQ RQRSSMLMQL LTEILLRDGG IQLLLGPSGM GEEGELKKYM MDLRSRQQFL LEAAHRCQEA GLYDKSVEIH KRVGAFAMAL
701: QTVNKCLSDA VCALAHNMSD GESRAVALIQ SGNEILETAR YSSEASVQDK DLISEQQIVL RQLEAILHIY RLARAGQTVD ALRETIKLPF LHLDPQSSNI
801: SVDVFRNLSP HVQACVPDLL KVALNCMDNV RDTDGTLRAV KSKIANLVAS NMSRDWPQDL YQKVAQCI
001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
Arabidopsis Description
NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.