Factsheet for Zm00001d046306_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034299_P001	Maize	cytosol	44.67	42.41
PGSC0003DMT400077824	Potato	cytosol	23.33	19.44
Zm00001d029142_P007	Maize	cytosol	86.67	14.91
EER92274	Sorghum	cytosol	84.0	14.42
Os03t0349000-01	Rice	cytosol	81.33	14.02
TraesCS4D01G154300.3	Wheat	cytosol	80.0	13.84
TraesCS4B01G153500.3	Wheat	cytosol	80.0	13.82
TraesCS4A01G141000.3	Wheat	cytosol	80.0	13.82
HORVU5Hr1G021240.1	Barley	cytosol	80.0	13.82
GSMUA_Achr2P04240_001	Banana	cytosol	66.0	11.81
VIT_08s0007g08940.t01	Wine grape	cytosol	59.33	10.31
KRH23559	Soybean	nucleus	56.67	9.87
KRH09759	Soybean	cytosol, endoplasmic reticulum, nucleus	56.67	9.87
Solyc04g016240.2.1	Tomato	cytosol, nucleus, plastid	55.33	9.63
CDY14781	Canola	cytosol	48.67	8.46
CDY06913	Canola	cytosol	48.67	8.46
Bra016924.1-P	Field mustard	cytosol	48.0	8.34
AT2G41620.1	Thale cress	nucleus	47.33	8.25
CDX72047	Canola	cytosol	46.67	8.12
Bra007321.1-P	Field mustard	cytosol	46.0	8.0
CDY06112	Canola	cytosol	46.0	8.0
AT3G57350.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	44.0	7.67
PGSC0003DMT400033102	Potato	cytosol	36.67	6.47
PGSC0003DMT400077823	Potato	cytosol	0.0	0.0

Protein Annotations

MapMan:23.5.1.1.3.1	UniProt:A0A1D6P217	ProteinID:AQL04058.1	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006810
GO:GO:0006913	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0017056	GO:GO:0051028
InterPro:Nucleoporin_int_Nup93/Nic96	PFAM:PF04097	PANTHER:PTHR11225	UniParc:UPI0008450CC4	EnsemblPlantsGene:Zm00001d046306	EnsemblPlants:Zm00001d046306_P001
EnsemblPlants:Zm00001d046306_T001	:	:	:	:	:

Description

Nuclear pore complex protein NUP93A

Coordinates

chr9:-:79736342..79737659

Molecular Weight (calculated)

16852.4 Da

IEP (calculated)

5.239

GRAVY (calculated)

-0.229

Length

150 amino acids

Sequence
(BLAST)

001: MELLMEILLW DGGIQLLLGP SGMGEGELKK YMMDWRSRQQ FLLEAAHRCQ EAGLYDKDVE IHKRVGAFAM ALQTINKCLS DAVSAMAWSM LDGESRAAAL
101: IHSGNEILET TRNSSEASIQ EKDLISKQQT VLRQLEAHPL LQKQYASYLP

Best Arabidopsis Sequence Match ( AT2G41620.1 )
(BLAST)

001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F

Arabidopsis Description

NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.