Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06913 | Canola | cytosol | 98.84 | 98.84 |
| CDY14781 | Canola | cytosol | 98.84 | 98.84 |
| AT2G41620.1 | Thale cress | nucleus | 93.63 | 93.84 |
| Bra007321.1-P | Field mustard | cytosol | 84.7 | 84.8 |
| VIT_08s0007g08940.t01 | Wine grape | cytosol | 73.46 | 73.46 |
| KRH23559 | Soybean | nucleus | 72.42 | 72.59 |
| PGSC0003DMT400077823 | Potato | cytosol | 10.43 | 72.58 |
| KRH09759 | Soybean | cytosol, endoplasmic reticulum, nucleus | 72.19 | 72.36 |
| Solyc04g016240.2.1 | Tomato | cytosol, nucleus, plastid | 71.03 | 71.11 |
| PGSC0003DMT400033102 | Potato | cytosol | 66.74 | 67.76 |
| GSMUA_Achr2P04240_001 | Banana | cytosol | 61.88 | 63.72 |
| PGSC0003DMT400077824 | Potato | cytosol | 12.98 | 62.22 |
| Os03t0349000-01 | Rice | cytosol | 62.11 | 61.61 |
| HORVU5Hr1G021240.1 | Barley | cytosol | 61.18 | 60.83 |
| TraesCS4A01G141000.3 | Wheat | cytosol | 61.07 | 60.71 |
| TraesCS4D01G154300.3 | Wheat | cytosol | 60.95 | 60.67 |
| TraesCS4B01G153500.3 | Wheat | cytosol | 60.95 | 60.6 |
| Zm00001d029142_P007 | Maize | cytosol | 61.07 | 60.44 |
| EER92274 | Sorghum | cytosol | 61.07 | 60.3 |
| Zm00001d034299_P001 | Maize | cytosol | 9.15 | 50.0 |
| Zm00001d046306_P001 | Maize | extracellular | 8.34 | 48.0 |
Protein Annotations
| MapMan:23.5.1.1.3.1 | EnsemblPlantsGene:Bra016924 | EnsemblPlants:Bra016924.1 | EnsemblPlants:Bra016924.1-P | GO:GO:0003674 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 |
| GO:GO:0005730 | GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0017056 | GO:GO:0051028 | UniProt:M4DK95 | InterPro:Nucleoporin_int_Nup93/Nic96 | PFAM:PF04097 |
| PANTHER:PTHR11225 | UniParc:UPI00025436F9 | SEG:seg | : | : | : |
Description
AT2G41620 (E=0.0) | nucleoporin interacting component family protein
Coordinates
chrA04:-:17581858..17586160
Molecular Weight (calculated)
96484.5 Da
IEP (calculated)
7.282
GRAVY (calculated)
-0.334
Length
863 amino acids
Sequence
(BLAST)
(BLAST)
001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDASREAN AGQLVPVASS SRVSSSTLGK ELVALANIPI
201: HEKKAYVYGE VVKKLNMSRE RGLPFKPAMS FKEAYESLGA EGTHGKSVNV QKIWQLVQAI TGEDSAVRQG VSKRMSLAIG ARRHLERGHE KHIMDTIQSH
301: PTQAALGGSV GNLQRIRAFL RIRLREYGVL DFDSPDARRQ PPVDTTWQQI YFCLRTGYYE EAKEIARSTR SSQQFAPLLT EWITKDGMVA AETAAIASEE
401: CEKMLRMGDR LGRTAYDKKK LLLYTIISGS RRQIERILRD LSTLFNTIED FLWFKLACIK DVSGASSSSV VLNDGLAPYS LDDLQTYLNK FEPSYYTKNG
501: KDPLVYPYVL LLSVQLLPAI IHLSKEAGEG GCNIDAVHIA ISLVDHSVLS EGSGTGHKLS VMDANAEASS MVRQYGSMFL HHGDLQMTVE YYAQAAVTVG
601: GGQLAWSGRS NTDQQRQRNL MLKQLLTEIL LREGGIYFLL GGRGSGEEGQ LGRFFPDSRL RQQFLIEAAH QCQEAGLYDK SIEIQKRVGA FASALETINK
701: CLSEAICSLA RGRLDGERRT SGLILAGNDI LQTYKYYPEV SLQEGERVME QETILRELEA ILSIHKLARQ GNHMDALREI AKLPFLNLDP RVPDATADVF
801: QSASPYFQTC VPDLLKVALT CLDNVPDPDG SIRAMRSKIA GFLASNTHRN WPRDLYEKVA RSF
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDASREAN AGQLVPVASS SRVSSSTLGK ELVALANIPI
201: HEKKAYVYGE VVKKLNMSRE RGLPFKPAMS FKEAYESLGA EGTHGKSVNV QKIWQLVQAI TGEDSAVRQG VSKRMSLAIG ARRHLERGHE KHIMDTIQSH
301: PTQAALGGSV GNLQRIRAFL RIRLREYGVL DFDSPDARRQ PPVDTTWQQI YFCLRTGYYE EAKEIARSTR SSQQFAPLLT EWITKDGMVA AETAAIASEE
401: CEKMLRMGDR LGRTAYDKKK LLLYTIISGS RRQIERILRD LSTLFNTIED FLWFKLACIK DVSGASSSSV VLNDGLAPYS LDDLQTYLNK FEPSYYTKNG
501: KDPLVYPYVL LLSVQLLPAI IHLSKEAGEG GCNIDAVHIA ISLVDHSVLS EGSGTGHKLS VMDANAEASS MVRQYGSMFL HHGDLQMTVE YYAQAAVTVG
601: GGQLAWSGRS NTDQQRQRNL MLKQLLTEIL LREGGIYFLL GGRGSGEEGQ LGRFFPDSRL RQQFLIEAAH QCQEAGLYDK SIEIQKRVGA FASALETINK
701: CLSEAICSLA RGRLDGERRT SGLILAGNDI LQTYKYYPEV SLQEGERVME QETILRELEA ILSIHKLARQ GNHMDALREI AKLPFLNLDP RVPDATADVF
801: QSASPYFQTC VPDLLKVALT CLDNVPDPDG SIRAMRSKIA GFLASNTHRN WPRDLYEKVA RSF
001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
Arabidopsis Description
NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.