Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400077823 | Potato | cytosol | 14.35 | 98.39 |
| Solyc04g016240.2.1 | Tomato | cytosol, nucleus, plastid | 93.41 | 92.11 |
| PGSC0003DMT400077824 | Potato | cytosol | 18.47 | 87.22 |
| VIT_08s0007g08940.t01 | Wine grape | cytosol | 76.24 | 75.09 |
| KRH23559 | Soybean | nucleus | 72.94 | 72.01 |
| KRH09759 | Soybean | cytosol, endoplasmic reticulum, nucleus | 72.94 | 72.01 |
| AT2G41620.1 | Thale cress | nucleus | 68.35 | 67.48 |
| CDY14781 | Canola | cytosol | 67.88 | 66.86 |
| Bra016924.1-P | Field mustard | cytosol | 67.76 | 66.74 |
| CDY06913 | Canola | cytosol | 67.76 | 66.74 |
| CDY06112 | Canola | cytosol | 67.53 | 66.51 |
| AT3G57350.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 67.18 | 66.4 |
| Bra007321.1-P | Field mustard | cytosol | 67.29 | 66.36 |
| CDX72047 | Canola | cytosol | 67.06 | 66.13 |
| GSMUA_Achr2P04240_001 | Banana | cytosol | 63.18 | 64.08 |
| Os03t0349000-01 | Rice | cytosol | 62.82 | 61.38 |
| HORVU5Hr1G021240.1 | Barley | cytosol | 62.59 | 61.29 |
| TraesCS4B01G153500.3 | Wheat | cytosol | 62.35 | 61.06 |
| TraesCS4A01G141000.3 | Wheat | cytosol | 62.24 | 60.94 |
| TraesCS4D01G154300.3 | Wheat | cytosol | 62.0 | 60.78 |
| Zm00001d029142_P007 | Maize | cytosol | 61.76 | 60.21 |
| EER92274 | Sorghum | cytosol | 61.65 | 59.95 |
| Zm00001d034299_P001 | Maize | cytosol | 10.35 | 55.7 |
| Zm00001d046306_P001 | Maize | extracellular | 6.47 | 36.67 |
Protein Annotations
| MapMan:23.5.1.1.3.1 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0017056 | GO:GO:0051028 | UniProt:M1AYL7 | InterPro:Nucleoporin_int_Nup93/Nic96 |
| PFAM:PF04097 | EnsemblPlantsGene:PGSC0003DMG400012709 | PGSC:PGSC0003DMG400012709 | EnsemblPlants:PGSC0003DMT400033102 | PANTHER:PTHR11225 | UniParc:UPI000294AA5A |
| SEG:seg | : | : | : | : | : |
Description
Nucleoporin interacting component; Protein prenyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400012709]
Coordinates
chr4:-:10929878..10939528
Molecular Weight (calculated)
95410.6 Da
IEP (calculated)
8.552
GRAVY (calculated)
-0.296
Length
850 amino acids
Sequence
(BLAST)
(BLAST)
001: MANDVDMSGW SELLHSSSKL LEQAAPSVQF PPLQRNLDQL EALTKKLKAK TLRTEAPTQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATT
101: VEEYLQQIHE MAMVSAVQEA QKDNLKNFND YMMKVLENDW KKEKRDFLQS LSRISTLPRT NISDSSPLRG RQGQIASLTY NPQISSGPSS VEPLALANRP
201: IVEKKAAAYG EVVKNLTSAR ERGLPFKPAT AFKCALESLG LNASGGKSVG IQKIWHLLSS LMGEDSAVQH NVSKKMSLVI GARRHLEWGH EKYIMETIQA
301: HPAQAALGGA VGNLQRIRAF LRIRLRDYGV LDFDAVDARR QPPIDTTWQQ IYFCMRTGYY NEAREISQQS RMSHQFAPLL TEWISTGGMV SAEMAAVASE
401: ECEKMFRLGD RGGRPTYDKK KLLLYTIISG SRRQIDRFLR EFPTLFSTIE DFLWFQLSAV RESPDRSSVV LSEGLAPYTL DDLQAYLNKF ESSHYTKNGK
501: DPLVYPYVLL LSIQLLPAVL YLSKDMGDEG YNVDAVHMAI VLADYGVLSE GTWVGQKFGV MDAFAEASSI IRQYGSFYLR HGDLLMSLEY YVQAAAAVGG
601: GQLSWSGRGN IDQQRQRSSM LKQLLTELLS RDGGIDILLG PRGTGEEGQL GRFLTDEKTR QQFLLEAARQ YQDAGLYDKG VGSGRDKGWT GKARLLGLFF
701: QEMRSWRCSN ITLRSGNMQI CPVVRHFLPQ ERENVLAQQI VLRQLEAVLS IHKLARLGNH LDAIKEVAKL PFLPLDPRMP DFAMDIFQNL SHHVQACVPD
801: LLKVALHCLD NVKDTDGSLR ALRAKIANFL ASNLNQNWPR DLYDKVARSL
101: VEEYLQQIHE MAMVSAVQEA QKDNLKNFND YMMKVLENDW KKEKRDFLQS LSRISTLPRT NISDSSPLRG RQGQIASLTY NPQISSGPSS VEPLALANRP
201: IVEKKAAAYG EVVKNLTSAR ERGLPFKPAT AFKCALESLG LNASGGKSVG IQKIWHLLSS LMGEDSAVQH NVSKKMSLVI GARRHLEWGH EKYIMETIQA
301: HPAQAALGGA VGNLQRIRAF LRIRLRDYGV LDFDAVDARR QPPIDTTWQQ IYFCMRTGYY NEAREISQQS RMSHQFAPLL TEWISTGGMV SAEMAAVASE
401: ECEKMFRLGD RGGRPTYDKK KLLLYTIISG SRRQIDRFLR EFPTLFSTIE DFLWFQLSAV RESPDRSSVV LSEGLAPYTL DDLQAYLNKF ESSHYTKNGK
501: DPLVYPYVLL LSIQLLPAVL YLSKDMGDEG YNVDAVHMAI VLADYGVLSE GTWVGQKFGV MDAFAEASSI IRQYGSFYLR HGDLLMSLEY YVQAAAAVGG
601: GQLSWSGRGN IDQQRQRSSM LKQLLTELLS RDGGIDILLG PRGTGEEGQL GRFLTDEKTR QQFLLEAARQ YQDAGLYDKG VGSGRDKGWT GKARLLGLFF
701: QEMRSWRCSN ITLRSGNMQI CPVVRHFLPQ ERENVLAQQI VLRQLEAVLS IHKLARLGNH LDAIKEVAKL PFLPLDPRMP DFAMDIFQNL SHHVQACVPD
801: LLKVALHCLD NVKDTDGSLR ALRAKIANFL ASNLNQNWPR DLYDKVARSL
001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
Arabidopsis Description
NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.