Factsheet for AT3G57350.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06112	Canola	cytosol	87.44	87.14
Bra007321.1-P	Field mustard	cytosol	87.09	86.89
CDX72047	Canola	cytosol	86.98	86.77
AT2G41620.1	Thale cress	nucleus	84.88	84.79
VIT_08s0007g08940.t01	Wine grape	cytosol	71.74	71.49
PGSC0003DMT400077823	Potato	cytosol	10.23	70.97
KRH09759	Soybean	cytosol, endoplasmic reticulum, nucleus	71.05	70.96
KRH23559	Soybean	nucleus	71.05	70.96
Solyc04g016240.2.1	Tomato	cytosol, nucleus, plastid	70.47	70.3
PGSC0003DMT400033102	Potato	cytosol	66.4	67.18
PGSC0003DMT400077824	Potato	cytosol	13.6	65.0
GSMUA_Achr2P04240_001	Banana	cytosol	60.47	62.05
Os03t0349000-01	Rice	cytosol	61.16	60.46
HORVU5Hr1G021240.1	Barley	cytosol	60.7	60.14
TraesCS4A01G141000.3	Wheat	cytosol	60.58	60.02
TraesCS4D01G154300.3	Wheat	cytosol	60.35	59.86
TraesCS4B01G153500.3	Wheat	cytosol	60.35	59.79
Zm00001d029142_P007	Maize	cytosol	59.88	59.06
EER92274	Sorghum	cytosol	59.65	58.7
Zm00001d034299_P001	Maize	cytosol	8.49	46.2
Zm00001d046306_P001	Maize	extracellular	7.67	44.0

Protein Annotations

MapMan:23.5.1.1.3.1	EntrezGene:824902	ProteinID:AEE79645.1	ArrayExpress:AT3G57350	EnsemblPlantsGene:AT3G57350	RefSeq:AT3G57350
TAIR:AT3G57350	RefSeq:AT3G57350-TAIR-G	EnsemblPlants:AT3G57350.1	TAIR:AT3G57350.1	Unigene:At.53966	ProteinID:CAB68141.1
UniProt:F4J284	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006606
GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015031
GO:GO:0016020	GO:GO:0016043	GO:GO:0016973	GO:GO:0017056	GO:GO:0051028	GO:GO:0051292
RefSeq:NP_191294.5	InterPro:Nucleoporin_int_Nup93/Nic96	PFAM:PF04097	PO:PO:0000293	PANTHER:PTHR11225	UniParc:UPI0001E92DB0
SEG:seg	:	:	:	:	:

Description

NUP93BNuclear pore complex protein NUP93B [Source:UniProtKB/Swiss-Prot;Acc:F4J284]

Coordinates

chr3:-:21220387..21225424

Molecular Weight (calculated)

96423.2 Da

IEP (calculated)

7.007

GRAVY (calculated)

-0.376

Length

860 amino acids

Sequence
(BLAST)

001: MANDQEMSGW TDLLHSSTKL LEQAAPSSQF PPLQRNLDQL EALSRKLKAK TLRNEAPSQS IAATRLLARE GINADQLSRD LKSFELKTTF EDVFPAETTS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFNN YMLKVLEEDC IKEKRDFLHS LSKTSMLPKT KMINSSRGSH AGSLVPLSPQ VSSKPGTELV SMTNKPIHEK
201: KAYVYAEVVK KLNSARERGL PFKLATLFNG AYESLEIDLT RGKSVNMQKL WQLIQGMTGE ESAVQHGVSK RMALVIGARR HLECGHGKHI MDTIQSHPTQ
301: AALGGSVGNL QRIRAFLRIR LRDYGSLDFD SVDARRQPPV DTTWQQIYFC LRTGYYEEAR EIAQSSRSSQ QQFAPLLTEW ITTGGTVAAQ TAATASEECE
401: KLLRMGDRFG QTTYDKKKLL LYTIISGSRR QIDRIMRDFS TLFNTIEDFL WFKLSCVRDV AGGSSSMIVN DGLVPYSLDD LQAYLNKFEP SYYTKNGKDP
501: LVYPYVLLLS IQLLPAIMHM SNEAGDEGYN IDAVHVAISL VDHSILSEGS GTGRKLSVMD ANAEASSMIR QYGSMYLHHG DLQMTLEYYA QAAIAVGGGQ
601: QAWSGRSNVD QQRQRNLMLK QLLTEILSQE DGIHFLLGAR GSGEEGELGR FLPDIKLRQQ FLIEAAHQFQ EAGLYDKSIE LQKRVGAFSS ALETINKCLS
701: EAICSLVRGR PDGESRTEGL VLSGNDILNS YKYHPDVSAQ ERHLVMEQET ILRELEAILS IHKLARLNKH LDAIREVAKL PFLHLDPRQP DTTSDEFQKA
801: SSYFQTCVPD LLKVALTCLD NVADTDGSIR GMRSKIAGFL ASNTQRNWPR DLYEKIARSF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.