Factsheet for Solyc04g016240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077823	Potato	cytosol	13.81	95.97
PGSC0003DMT400033102	Potato	cytosol	92.11	93.41
PGSC0003DMT400077824	Potato	cytosol	18.33	87.78
VIT_08s0007g08940.t01	Wine grape	cytosol	80.05	79.95
KRH09759	Soybean	cytosol, endoplasmic reticulum, nucleus	77.03	77.12
KRH23559	Soybean	nucleus	76.8	76.89
AT2G41620.1	Thale cress	nucleus	71.93	72.01
CDY14781	Canola	cytosol	71.35	71.26
CDY06913	Canola	cytosol	71.23	71.15
Bra016924.1-P	Field mustard	cytosol	71.11	71.03
CDY06112	Canola	cytosol	70.65	70.57
Bra007321.1-P	Field mustard	cytosol	70.53	70.53
AT3G57350.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	70.3	70.47
CDX72047	Canola	cytosol	70.3	70.3
GSMUA_Achr2P04240_001	Banana	cytosol	65.78	67.66
Os03t0349000-01	Rice	cytosol	65.89	65.29
HORVU5Hr1G021240.1	Barley	cytosol	65.43	64.98
TraesCS4B01G153500.3	Wheat	cytosol	65.08	64.63
TraesCS4D01G154300.3	Wheat	cytosol	64.73	64.36
TraesCS4A01G141000.3	Wheat	cytosol	64.73	64.29
Zm00001d029142_P007	Maize	cytosol	64.62	63.88
EER92274	Sorghum	cytosol	64.27	63.39
Zm00001d034299_P001	Maize	cytosol	10.44	56.96
Zm00001d046306_P001	Maize	extracellular	9.63	55.33

Protein Annotations

MapMan:23.5.1.1.3.1	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016973
GO:GO:0017056	GO:GO:0051028	GO:GO:0051292	UniProt:K4BQC4	InterPro:Nucleoporin_int_Nup93/Nic96	PFAM:PF04097
PANTHER:PTHR11225	EnsemblPlantsGene:Solyc04g016240.2	EnsemblPlants:Solyc04g016240.2.1	UniParc:UPI0002767159	SEG:seg	:

Description

Nuclear pore protein [Source:UniProtKB/TrEMBL;Acc:K4BQC4]

Coordinates

chr4:-:7033018..7042931

Molecular Weight (calculated)

96345.5 Da

IEP (calculated)

7.415

GRAVY (calculated)

-0.285

Length

862 amino acids

Sequence
(BLAST)

001: MANDVDMSGW SELLHSSSKL LEQAAPSAQF PPLQRNLDQL EALTKKLKAK TLRTEAPTQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATT
101: VEEYLQQIHE MAMVSAVQEA QKDNLKNFND YMMKVLENDW KKEKRDFLQS LSRISTLPRT NISESSPLRG RQGQIASLTY SPQISSGPSS MEPLALTNRP
201: IVEKKAAAYG EVVKNLTSAR ERGLPFKPAT AFKCALESLG LNASGGKSVG IQKIWHLLSS LMGEDSAVQR NVSKKMSLVI GARRHLEWGH EKYIMETIQA
301: HPAQAALGGA VGNLQRIRAF LRIRLRDYGV LDFDAADARR QPPVDTTWQQ IYFCMRTGYF NEAREISQQS RMSHQFAPLL TEWISTGGMV SAEMAAVASE
401: ECEKMFRLGD RGGRPTYDKK KLLLYTIISG SRRQIDRFLR EFPTLFSTIE DFLWFQLSAV RESPARSSAV LSEGLAPYTL DDLQAYLNKF ESSHYTKNGK
501: DPLVYPYVLL LSIQLLPAVL YLSKDMGDEG YNVDAVHMAI VLADYGVLSE GTWVGQKFGV MDAFAEASSI IRQYGSFYLR HGDLLMSLEY YVQAAAAVGG
601: GQLSWSGRGN IDQQRQRTSM LKQLLTELLS RDGGIDILLG PRGTGEEGQL GRFLTDEKTR QQFLLEAARQ YQDAGLYDKS IEIQKRVGAF SAALDTINKC
701: LSDAICALAR GRLDGESQTS GLILSGNEIL EMFKYYPEIS PQERENVLAQ QIVLRQLEAV LSIHKLARLG NHLDAIKEVA KLPFLPLDPR TPDFTTDIFQ
801: NLSHHVQACV PDLLKVALHC LDNVKDTDGS LRALRAKIAN FLASNLNQNW PRDLYDKVAR SL

Best Arabidopsis Sequence Match ( AT2G41620.1 )
(BLAST)

001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F

Arabidopsis Description

NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.