Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06112 | Canola | cytosol | 98.03 | 97.91 |
| AT3G57350.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 86.77 | 86.98 |
| CDY06913 | Canola | cytosol | 84.57 | 84.47 |
| CDY14781 | Canola | cytosol | 84.57 | 84.47 |
| PGSC0003DMT400077823 | Potato | cytosol | 10.32 | 71.77 |
| KRH23559 | Soybean | nucleus | 71.35 | 71.43 |
| VIT_08s0007g08940.t01 | Wine grape | cytosol | 71.46 | 71.38 |
| KRH09759 | Soybean | cytosol, endoplasmic reticulum, nucleus | 71.0 | 71.08 |
| Solyc04g016240.2.1 | Tomato | cytosol, nucleus, plastid | 70.3 | 70.3 |
| PGSC0003DMT400033102 | Potato | cytosol | 66.13 | 67.06 |
| PGSC0003DMT400077824 | Potato | cytosol | 13.34 | 63.89 |
| GSMUA_Achr2P04240_001 | Banana | cytosol | 59.74 | 61.46 |
| Os03t0349000-01 | Rice | cytosol | 60.79 | 60.23 |
| TraesCS4A01G141000.3 | Wheat | cytosol | 60.32 | 59.91 |
| TraesCS4B01G153500.3 | Wheat | cytosol | 59.98 | 59.56 |
| TraesCS4D01G154300.3 | Wheat | cytosol | 59.86 | 59.52 |
| HORVU5Hr1G021240.1 | Barley | cytosol | 59.86 | 59.45 |
| Zm00001d029142_P007 | Maize | cytosol | 59.98 | 59.29 |
| EER92274 | Sorghum | cytosol | 59.51 | 58.7 |
| Zm00001d046306_P001 | Maize | extracellular | 8.12 | 46.67 |
| Zm00001d034299_P001 | Maize | cytosol | 8.12 | 44.3 |
Protein Annotations
| EnsemblPlants:CDX72047 | EnsemblPlantsGene:GSBRNA2T00155836001 | GO:A0A078C577 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0017056 |
| InterPro:Nucleoporin_int_Nup93/Nic96 | PANTHER:PTHR11225 | PFAM:PF04097 | ProteinID:CDX72047 | ProteinID:CDX72047.1 | SEG:seg |
| UniParc:UPI0004EE9036 | MapMan:23.5.1.1.3.1 | : | : | : | : |
Description
BnaC08g28270D
Coordinates
chrLK031795:+:2026173..2031059
Molecular Weight (calculated)
96908.6 Da
IEP (calculated)
7.057
GRAVY (calculated)
-0.369
Length
862 amino acids
Sequence
(BLAST)
(BLAST)
001: MANDQEMSGW TDLLHSSTKL LEQAAPSSQF PPLQRNLDQL EALSRKLKAK TLRSEAPSQS IAATSRLLAR EGINAEQLSR DLRSFELKTT FEDVFPAEAT
101: SVEEYLQQVH EMAMVSAIQE AQKDNVRSFN DYMLKVLEED CRKEKRDFLQ SRSKLSMIPK TKMIDTSRDT HAGQLVPVAS SPQVSNTGTE LVSLANKPIH
201: EKKAHVYAEV VKKLNSSRER GLPFRPATSF KDAYESLGID LTRGKSVSVQ KLWQLIQAMT GEDSAVHKGV SKRMSLVIGA RRHLECGHQK HIMDTIQSHP
301: TQAALGGSVG NLQRVRAFLR IRLRDYGILD FDSGDARRQP PVDTTWQQIY FCLRSGYYDE AREIAQSSRS SQQQFAPLLT EWITTGGTVT TNTAAIASEE
401: CEKLFRLGDR LGQTTYDKKK LLLYTIISGS RRQIDRILRE FSTLFNTIED FLWFKLSCIR DVASGSSSLV FNDGLVPYSL DDLQAYLNKF EPAYYTKNGK
501: DPLVYPYVLL LSIQLLPAIM HMSQEAGDEW YNIDAVHIAI SLVDHSVLSE GSGTGHKLSV MDANAEASSM IRQYGSMYLH HGDMQMTLEY YAQAAIAVGG
601: GQLVWSGRSN VDQQRQRNLM LKQLLTEILL REGGIYFLLG ARGSGEEGEL GRFFPDSKSR QQFLIEAANQ CQDAGLFEKS IEIQKRVGAY AAALETINKC
701: LSEAICSLLR GRSDGESRTA GLVLSGNEIL DTYKYYPEVC PQERERVMEQ ETIIRELEAI LSIHKLARLG NHLDALKEAA KLPFLHLDPR LSDTTPDEFQ
801: RASSYFKTCV PDLLKVVLTC LDNIPDRDGS IRVMRSKIAG FLASNTHQNW PRDLYEKVAR SF
101: SVEEYLQQVH EMAMVSAIQE AQKDNVRSFN DYMLKVLEED CRKEKRDFLQ SRSKLSMIPK TKMIDTSRDT HAGQLVPVAS SPQVSNTGTE LVSLANKPIH
201: EKKAHVYAEV VKKLNSSRER GLPFRPATSF KDAYESLGID LTRGKSVSVQ KLWQLIQAMT GEDSAVHKGV SKRMSLVIGA RRHLECGHQK HIMDTIQSHP
301: TQAALGGSVG NLQRVRAFLR IRLRDYGILD FDSGDARRQP PVDTTWQQIY FCLRSGYYDE AREIAQSSRS SQQQFAPLLT EWITTGGTVT TNTAAIASEE
401: CEKLFRLGDR LGQTTYDKKK LLLYTIISGS RRQIDRILRE FSTLFNTIED FLWFKLSCIR DVASGSSSLV FNDGLVPYSL DDLQAYLNKF EPAYYTKNGK
501: DPLVYPYVLL LSIQLLPAIM HMSQEAGDEW YNIDAVHIAI SLVDHSVLSE GSGTGHKLSV MDANAEASSM IRQYGSMYLH HGDMQMTLEY YAQAAIAVGG
601: GQLVWSGRSN VDQQRQRNLM LKQLLTEILL REGGIYFLLG ARGSGEEGEL GRFFPDSKSR QQFLIEAANQ CQDAGLFEKS IEIQKRVGAY AAALETINKC
701: LSEAICSLLR GRSDGESRTA GLVLSGNEIL DTYKYYPEVC PQERERVMEQ ETIIRELEAI LSIHKLARLG NHLDALKEAA KLPFLHLDPR LSDTTPDEFQ
801: RASSYFKTCV PDLLKVVLTC LDNIPDRDGS IRVMRSKIAG FLASNTHQNW PRDLYEKVAR SF
001: MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS PRVSSTPGKE LVALANIPIH
201: EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301: TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC
401: EKMLRMGDRL GRTAYDKKKL LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD DLQAYLNKFE PSYYTKNGKD
501: PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601: QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL
701: SEAICSLARG RLDGESRTSG LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK LPFLHLDPRM PDATADVFQS
801: ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF LASNTHRNWP RDLYEKVARS F
Arabidopsis Description
NUP93ANuclear pore complex protein NUP93A [Source:UniProtKB/Swiss-Prot;Acc:O22224]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.