Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046306_P001 | Maize | extracellular | 42.41 | 44.67 |
| PGSC0003DMT400077824 | Potato | cytosol | 24.05 | 21.11 |
| Zm00001d029142_P007 | Maize | cytosol | 91.14 | 16.51 |
| EER92274 | Sorghum | cytosol | 87.97 | 15.9 |
| HORVU5Hr1G021240.1 | Barley | cytosol | 86.08 | 15.67 |
| Os03t0349000-01 | Rice | cytosol | 86.08 | 15.63 |
| TraesCS4B01G153500.3 | Wheat | cytosol | 84.81 | 15.44 |
| TraesCS4D01G154300.3 | Wheat | cytosol | 84.18 | 15.34 |
| TraesCS4A01G141000.3 | Wheat | cytosol | 84.18 | 15.32 |
| GSMUA_Achr2P04240_001 | Banana | cytosol | 68.99 | 13.01 |
| VIT_08s0007g08940.t01 | Wine grape | cytosol | 61.39 | 11.24 |
| KRH23559 | Soybean | nucleus | 57.59 | 10.57 |
| KRH09759 | Soybean | cytosol, endoplasmic reticulum, nucleus | 56.96 | 10.45 |
| Solyc04g016240.2.1 | Tomato | cytosol, nucleus, plastid | 56.96 | 10.44 |
| PGSC0003DMT400033102 | Potato | cytosol | 55.7 | 10.35 |
| AT2G41620.1 | Thale cress | nucleus | 50.0 | 9.18 |
| CDY14781 | Canola | cytosol | 50.0 | 9.15 |
| CDY06913 | Canola | cytosol | 50.0 | 9.15 |
| Bra016924.1-P | Field mustard | cytosol | 50.0 | 9.15 |
| AT3G57350.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 46.2 | 8.49 |
| Bra007321.1-P | Field mustard | cytosol | 44.94 | 8.24 |
| CDY06112 | Canola | cytosol | 44.94 | 8.23 |
| CDX72047 | Canola | cytosol | 44.3 | 8.12 |
| PGSC0003DMT400077823 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:23.5.1.1.3.1 | UniProt:A0A1D6L6L3 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0006810 | GO:GO:0006913 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0017056 | GO:GO:0051028 | InterPro:Nucleoporin_int_Nup93/Nic96 |
| ProteinID:ONM09937.1 | PFAM:PF04097 | PANTHER:PTHR11225 | UniParc:UPI000221DFFE | EnsemblPlantsGene:Zm00001d034299 | EnsemblPlants:Zm00001d034299_P001 |
| EnsemblPlants:Zm00001d034299_T001 | : | : | : | : | : |
Description
Nuclear pore complex protein NUP93A
Coordinates
chr1:-:288763189..288764672
Molecular Weight (calculated)
17957.0 Da
IEP (calculated)
7.128
GRAVY (calculated)
-0.106
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MEILLRDGGI QLLLGPSGMG EGELKKYIMD WRSRQQFLLE AAHRCQEVGL YDKHSREDLI SEQQTVLRHL EAILHIYRLA RAGQTVDALR ETIRLPFLHL
101: DPKAPNVTVD IFRNLSPHVQ ACVPDLLMVA LNCIDNVRDT DGTLRAVKTK VVQLMSFS
101: DPKAPNVTVD IFRNLSPHVQ ACVPDLLMVA LNCIDNVRDT DGTLRAVKTK VVQLMSFS
001: MANDQEMSGW TDLLHSSTKL LEQAAPSSQF PPLQRNLDQL EALSRKLKAK TLRNEAPSQS IAATRLLARE GINADQLSRD LKSFELKTTF EDVFPAETTS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFNN YMLKVLEEDC IKEKRDFLHS LSKTSMLPKT KMINSSRGSH AGSLVPLSPQ VSSKPGTELV SMTNKPIHEK
201: KAYVYAEVVK KLNSARERGL PFKLATLFNG AYESLEIDLT RGKSVNMQKL WQLIQGMTGE ESAVQHGVSK RMALVIGARR HLECGHGKHI MDTIQSHPTQ
301: AALGGSVGNL QRIRAFLRIR LRDYGSLDFD SVDARRQPPV DTTWQQIYFC LRTGYYEEAR EIAQSSRSSQ QQFAPLLTEW ITTGGTVAAQ TAATASEECE
401: KLLRMGDRFG QTTYDKKKLL LYTIISGSRR QIDRIMRDFS TLFNTIEDFL WFKLSCVRDV AGGSSSMIVN DGLVPYSLDD LQAYLNKFEP SYYTKNGKDP
501: LVYPYVLLLS IQLLPAIMHM SNEAGDEGYN IDAVHVAISL VDHSILSEGS GTGRKLSVMD ANAEASSMIR QYGSMYLHHG DLQMTLEYYA QAAIAVGGGQ
601: QAWSGRSNVD QQRQRNLMLK QLLTEILSQE DGIHFLLGAR GSGEEGELGR FLPDIKLRQQ FLIEAAHQFQ EAGLYDKSIE LQKRVGAFSS ALETINKCLS
701: EAICSLVRGR PDGESRTEGL VLSGNDILNS YKYHPDVSAQ ERHLVMEQET ILRELEAILS IHKLARLNKH LDAIREVAKL PFLHLDPRQP DTTSDEFQKA
801: SSYFQTCVPD LLKVALTCLD NVADTDGSIR GMRSKIAGFL ASNTQRNWPR DLYEKIARSF
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFNN YMLKVLEEDC IKEKRDFLHS LSKTSMLPKT KMINSSRGSH AGSLVPLSPQ VSSKPGTELV SMTNKPIHEK
201: KAYVYAEVVK KLNSARERGL PFKLATLFNG AYESLEIDLT RGKSVNMQKL WQLIQGMTGE ESAVQHGVSK RMALVIGARR HLECGHGKHI MDTIQSHPTQ
301: AALGGSVGNL QRIRAFLRIR LRDYGSLDFD SVDARRQPPV DTTWQQIYFC LRTGYYEEAR EIAQSSRSSQ QQFAPLLTEW ITTGGTVAAQ TAATASEECE
401: KLLRMGDRFG QTTYDKKKLL LYTIISGSRR QIDRIMRDFS TLFNTIEDFL WFKLSCVRDV AGGSSSMIVN DGLVPYSLDD LQAYLNKFEP SYYTKNGKDP
501: LVYPYVLLLS IQLLPAIMHM SNEAGDEGYN IDAVHVAISL VDHSILSEGS GTGRKLSVMD ANAEASSMIR QYGSMYLHHG DLQMTLEYYA QAAIAVGGGQ
601: QAWSGRSNVD QQRQRNLMLK QLLTEILSQE DGIHFLLGAR GSGEEGELGR FLPDIKLRQQ FLIEAAHQFQ EAGLYDKSIE LQKRVGAFSS ALETINKCLS
701: EAICSLVRGR PDGESRTEGL VLSGNDILNS YKYHPDVSAQ ERHLVMEQET ILRELEAILS IHKLARLNKH LDAIREVAKL PFLHLDPRQP DTTSDEFQKA
801: SSYFQTCVPD LLKVALTCLD NVADTDGSIR GMRSKIAGFL ASNTQRNWPR DLYEKIARSF
Arabidopsis Description
NUP93BNuclear pore complex protein NUP93B [Source:UniProtKB/Swiss-Prot;Acc:F4J284]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.