Factsheet for VIT_07s0104g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g00620.t01
VIT_03s0038g04360.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_14s0006g03230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03150.1	VIT_01s0011g00620.t01	AT1G26480.1	21798944
AT4G03150.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT4G03150.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT4G03150.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT4G03150.1	VIT_14s0006g03230.t01	AT5G38480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g084470.2.1	Tomato	plastid	48.33	50.58
Bra034190.1-P	Field mustard	plastid	48.89	49.44
CDY21946	Canola	plastid	47.78	48.31
AT4G03150.1	Thale cress	plastid	48.89	47.57
PGSC0003DMT400061795	Potato	extracellular, plastid	45.0	47.09
TraesCS5B01G102100.1	Wheat	plastid	45.56	46.86
EES17129	Sorghum	plastid	44.44	45.98
GSMUA_Achr2P02390_001	Banana	plastid	47.78	45.74
TraesCS5D01G108800.1	Wheat	plastid	44.44	45.45
CDY22107	Canola	plastid	47.78	45.26
KRG96366	Soybean	cytosol	51.67	45.15
Os12t0534100-01	Rice	plastid	42.22	44.19
Zm00001d023888_P001	Maize	plastid	42.78	42.31
HORVU5Hr1G025950.6	Barley	nucleus	43.89	37.26
TraesCS5A01G096200.1	Wheat	nucleus	43.33	36.62

Protein Annotations

ArrayExpress:VIT_07s0104g01220	EMBL:FN596005	EnsemblPlants:VIT_07s0104g01220.t01	EnsemblPlantsGene:VIT_07s0104g01220	EntrezGene:100240762	EntrezGene:LOC100240762
PANTHER:PTHR36776	PANTHER:PTHR36776:SF1	ProteinID:CBI32273	ProteinID:CBI32273.3	RefSeq:XP_002270167	RefSeq:XP_002270167.1
RefSeq:XP_010652078.1	RefSeq:XP_019076428.1	unigene:Vvi.22532	UniParc:UPI00015CADB1	UniProt:D7TP50	wikigene:100240762
wikigene:LOC100240762	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7:-:2254200..2256081

Molecular Weight (calculated)

20421.7 Da

IEP (calculated)

4.900

GRAVY (calculated)

-0.569

Length

180 amino acids

Sequence
(BLAST)

001: MLSSLFFHTR TTIPNSNDLQ FSKLHSALTI GTSALNFKVN SQPTPPLKGH LRNRSVPRSQ SSSDPQSYEE GDEETLVQDL RVPDHWLNPS KALEESEWLR
101: VTLHKWLDDE YCPEATNIEI SRVAANSYYR SLVEKQTDLG EILLKMAREL ESISYQESFH GAFSSANAAV DLIAQRIEQD

Best Arabidopsis Sequence Match ( AT4G03150.1 )
(BLAST)

001: MSSWVCSSVT RNVVKSHPLS LTKHLDFPAT IRRRSVSFPA TIRRRSVSFP ITSAPKFPSL KLQKSQSSIH EGEEDSESAV QALTIPEEWL LPSRAIEESE
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV

Arabidopsis Description

AT4g03150/F4C21_7 [Source:UniProtKB/TrEMBL;Acc:Q944G6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.