Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0104g01220.t01 | Wine grape | plastid | 45.15 | 51.67 |
| PGSC0003DMT400061795 | Potato | extracellular, plastid | 38.84 | 46.51 |
| Bra034190.1-P | Field mustard | plastid | 39.81 | 46.07 |
| CDY21946 | Canola | plastid | 39.81 | 46.07 |
| Os12t0534100-01 | Rice | plastid | 37.86 | 45.35 |
| Solyc06g084470.2.1 | Tomato | plastid | 37.86 | 45.35 |
| EES17129 | Sorghum | plastid | 36.89 | 43.68 |
| AT4G03150.1 | Thale cress | plastid | 38.84 | 43.24 |
| CDY22107 | Canola | plastid | 39.81 | 43.16 |
| TraesCS5B01G102100.1 | Wheat | plastid | 33.98 | 40.0 |
| GSMUA_Achr2P02390_001 | Banana | plastid | 36.41 | 39.89 |
| TraesCS5D01G108800.1 | Wheat | plastid | 33.98 | 39.77 |
| Zm00001d023888_P001 | Maize | plastid | 34.95 | 39.56 |
| TraesCS5A01G096200.1 | Wheat | nucleus | 36.89 | 35.68 |
| HORVU5Hr1G025950.6 | Barley | nucleus | 34.95 | 33.96 |
Protein Annotations
| EMBL:ACUP02012154 | EnsemblPlants:KRG96366 | EnsemblPlantsGene:GLYMA_19G206000 | PANTHER:PTHR36776 | PANTHER:PTHR36776:SF1 | ProteinID:KRG96366 |
| ProteinID:KRG96366.1 | SEG:seg | UniParc:UPI0002965E3B | UniProt:K7MZF6 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr19:-:46165142..46166471
Molecular Weight (calculated)
23578.0 Da
IEP (calculated)
6.393
GRAVY (calculated)
-0.367
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRIGSCDFY FIFVCREKER RRQYPMNMMT TLKLNLGQHM IVSPRATRTV AFAPPSSVTV SLTHQHASAP SSSSSLILRH NGTRVRSHSQ PFPESDDQVE
101: DLRVPDNWLD PTIAFQESEW LRVTLHKWLD DEYCPEETNV EISRVAANSF YNSLLQKQTD LGEILLKMAR ELESINYKES FHGAFSSANA AIDLIAQRIE
201: QLCQSI
101: DLRVPDNWLD PTIAFQESEW LRVTLHKWLD DEYCPEETNV EISRVAANSF YNSLLQKQTD LGEILLKMAR ELESINYKES FHGAFSSANA AIDLIAQRIE
201: QLCQSI
001: MSSWVCSSVT RNVVKSHPLS LTKHLDFPAT IRRRSVSFPA TIRRRSVSFP ITSAPKFPSL KLQKSQSSIH EGEEDSESAV QALTIPEEWL LPSRAIEESE
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
Arabidopsis Description
AT4g03150/F4C21_7 [Source:UniProtKB/TrEMBL;Acc:Q944G6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.