Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G102100.1 | Wheat | plastid | 67.14 | 81.71 |
| TraesCS5D01G108800.1 | Wheat | plastid | 67.14 | 81.25 |
| HORVU5Hr1G025950.6 | Barley | nucleus | 66.2 | 66.51 |
| Os12t0534100-01 | Rice | plastid | 50.7 | 62.79 |
| EES17129 | Sorghum | plastid | 50.23 | 61.49 |
| Zm00001d023888_P001 | Maize | plastid | 48.83 | 57.14 |
| CDY21946 | Canola | plastid | 38.5 | 46.07 |
| GSMUA_Achr2P02390_001 | Banana | plastid | 39.91 | 45.21 |
| Bra034190.1-P | Field mustard | plastid | 37.09 | 44.38 |
| VIT_07s0104g01220.t01 | Wine grape | plastid | 36.62 | 43.33 |
| CDY22107 | Canola | plastid | 38.03 | 42.63 |
| Solyc06g084470.2.1 | Tomato | plastid | 34.27 | 42.44 |
| PGSC0003DMT400061795 | Potato | extracellular, plastid | 33.33 | 41.28 |
| AT4G03150.1 | Thale cress | plastid | 34.74 | 40.0 |
| KRG96366 | Soybean | cytosol | 35.68 | 36.89 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G096200.1 | EnsemblPlantsGene:TraesCS5A01G096200 | PANTHER:PTHR36776 | PANTHER:PTHR36776:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr5A:+:135061300..135062231
Molecular Weight (calculated)
24148.5 Da
IEP (calculated)
9.980
GRAVY (calculated)
-0.749
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFNKPERDT HHTSPLEKRS RHRRTIRKRK RKKEERENGI FYLILRPSPP WPRLCFSLEG ATFLRFSPVS PSSPLSTSIS INASSPRRLL PHAPRAAGRG
101: SDKDNRVQEL RVPDSWLTPT GAAQESEWLR GTLHKWLDDE YCPEPANVDI SNTAARSYHE SLTAKQSDVG EILMKMVGDL QELSYQESFH GAFSAANAAV
201: RLITQRMEPS AGE
101: SDKDNRVQEL RVPDSWLTPT GAAQESEWLR GTLHKWLDDE YCPEPANVDI SNTAARSYHE SLTAKQSDVG EILMKMVGDL QELSYQESFH GAFSAANAAV
201: RLITQRMEPS AGE
001: MSSWVCSSVT RNVVKSHPLS LTKHLDFPAT IRRRSVSFPA TIRRRSVSFP ITSAPKFPSL KLQKSQSSIH EGEEDSESAV QALTIPEEWL LPSRAIEESE
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
Arabidopsis Description
AT4g03150/F4C21_7 [Source:UniProtKB/TrEMBL;Acc:Q944G6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.