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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra012455.1-P
Bra016273.1-P
Bra018081.1-P
Bra024713.1-P
Bra028187.1-P
Bra028409.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G03150.1 Bra012455.1-P AT1G26480.1 21798944
AT4G03150.1 Bra016273.1-P AT1G26480.1 21798944
AT4G03150.1 Bra024713.1-P AT1G26480.1 21798944
AT4G03150.1 Bra018081.1-P AT3G48150.1 21798944
AT4G03150.1 Bra033769.1-P AT3G48150.1 21798944
AT4G03150.1 Bra028187.1-P AT5G38480.1 21798944
AT4G03150.1 Bra028409.1-P AT5G38480.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY21946 Canola plastid 94.94 94.94
CDY22107 Canola plastid 96.07 90.0
AT4G03150.1 Thale cress plastid 70.79 68.11
VIT_07s0104g01220.t01 Wine grape plastid 49.44 48.89
PGSC0003DMT400061795 Potato extracellular, plastid 46.63 48.26
Solyc06g084470.2.1 Tomato plastid 46.07 47.67
Os12t0534100-01 Rice plastid 43.82 45.35
TraesCS5B01G102100.1 Wheat plastid 44.38 45.14
GSMUA_Achr2P02390_001 Banana plastid 46.63 44.15
TraesCS5D01G108800.1 Wheat plastid 42.7 43.18
EES17129 Sorghum plastid 39.89 40.8
KRG96366 Soybean cytosol 46.07 39.81
TraesCS5A01G096200.1 Wheat nucleus 44.38 37.09
Zm00001d023888_P001 Maize plastid 37.64 36.81
HORVU5Hr1G025950.6 Barley nucleus 43.82 36.79
Protein Annotations
EnsemblPlants:Bra034190.1EnsemblPlants:Bra034190.1-PEnsemblPlantsGene:Bra034190PANTHER:PTHR36776PANTHER:PTHR36776:SF1UniParc:UPI0002543BEC
UniProt:M4EZE7MapMan:35.2::::
Description
AT4G03150 (E=2e-067) | unknown protein
Coordinates
chrA01:+:27021150..27022371
Molecular Weight (calculated)
19999.5 Da
IEP (calculated)
5.031
GRAVY (calculated)
-0.338
Length
178 amino acids
Sequence
(BLAST)
001: MSSWVCSYVT LNVVTSDHPP QHQFSLSQHF GSPASTRRAS VKLPLTSTPK FRPLKLQKFQ SLSSTHEGEE DSESVVQTLK IPDEWLLPSK AIEESEWLRV
101: TLHKWLDDEY CPEPTNVEIS NVAAKSLYTS LLEKETDMGT ILLKMAQDLT SVSYQESFHG AFTSANAAIN LIVERLES
Best Arabidopsis Sequence Match ( AT4G03150.1 )
(BLAST)
001: MSSWVCSSVT RNVVKSHPLS LTKHLDFPAT IRRRSVSFPA TIRRRSVSFP ITSAPKFPSL KLQKSQSSIH EGEEDSESAV QALTIPEEWL LPSRAIEESE
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
Arabidopsis Description
AT4g03150/F4C21_7 [Source:UniProtKB/TrEMBL;Acc:Q944G6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.