Factsheet for Solyc06g084470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 3
golgi 2
plasma membrane 2
endoplasmic reticulum 3
vacuole 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010360.2.1
Solyc02g063070.2.1
Solyc03g034180.2.1
Solyc03g113740.2.1
Solyc05g012420.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03150.1	Solyc01g010360.2.1	AT1G26480.1	21798944
AT4G03150.1	Solyc05g012420.2.1	AT1G26480.1	21798944
AT4G03150.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT4G03150.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT4G03150.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT4G03150.1	Solyc02g063070.2.1	AT5G38480.1	21798944
AT4G03150.1	Solyc03g034180.2.1	AT5G38480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061795	Potato	extracellular, plastid	67.44	67.44
VIT_07s0104g01220.t01	Wine grape	plastid	50.58	48.33
Bra034190.1-P	Field mustard	plastid	47.67	46.07
CDY21946	Canola	plastid	47.67	46.07
Os12t0534100-01	Rice	plastid	44.77	44.77
CDY22107	Canola	plastid	47.67	43.16
AT4G03150.1	Thale cress	plastid	45.35	42.16
TraesCS5D01G108800.1	Wheat	plastid	43.02	42.05
TraesCS5B01G102100.1	Wheat	plastid	42.44	41.71
EES17129	Sorghum	plastid	40.12	39.66
GSMUA_Achr2P02390_001	Banana	plastid	41.86	38.3
KRG96366	Soybean	cytosol	45.35	37.86
Zm00001d023888_P001	Maize	plastid	39.53	37.36
TraesCS5A01G096200.1	Wheat	nucleus	42.44	34.27
HORVU5Hr1G025950.6	Barley	nucleus	41.86	33.96

Protein Annotations

EnsemblPlants:Solyc06g084470.2.1	EnsemblPlantsGene:Solyc06g084470.2	PANTHER:PTHR36776	PANTHER:PTHR36776:SF1	SignalP:SignalP-noTM	UniParc:UPI000276B9CD
UniProt:K4CAV2	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6:-:49563963..49566385

Molecular Weight (calculated)

19617.3 Da

IEP (calculated)

4.403

GRAVY (calculated)

-0.216

Length

172 amino acids

Sequence
(BLAST)

001: MAWPLLTVSG CYCLGLSQLH VNVQLQPITR REIVHPSIHQ CILSVDRIRA RLPLLNAQTN GDYDSEQLIE DLRVPQQWLQ PSKALEESEW LQTALNKWLD
101: DEYCPEETNI EISRIAANSF YRSLLENKSD IGEILLTMAG DLESISYQES FHGAFSSANA AVNLIIQRLE QY

Best Arabidopsis Sequence Match ( AT4G03150.1 )
(BLAST)

001: MSSWVCSSVT RNVVKSHPLS LTKHLDFPAT IRRRSVSFPA TIRRRSVSFP ITSAPKFPSL KLQKSQSSIH EGEEDSESAV QALTIPEEWL LPSRAIEESE
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV

Arabidopsis Description

AT4g03150/F4C21_7 [Source:UniProtKB/TrEMBL;Acc:Q944G6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.