Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 2
- nucleus 1
- mitochondrion 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03150.1 | PGSC0003DMT400072941 | AT1G26480.1 | 21798944 |
| AT4G03150.1 | PGSC0003DMT400023896 | AT1G71230.1 | 21798944 |
| AT4G03150.1 | PGSC0003DMT400069203 | AT1G71230.1 | 21798944 |
| AT4G03150.1 | PGSC0003DMT400063189 | AT3G48150.1 | 21798944 |
| AT4G03150.1 | PGSC0003DMT400050389 | AT5G38480.1 | 21798944 |
| AT4G03150.1 | PGSC0003DMT400062153 | AT5G38480.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g084470.2.1 | Tomato | plastid | 67.44 | 67.44 |
| Bra034190.1-P | Field mustard | plastid | 48.26 | 46.63 |
| CDY21946 | Canola | plastid | 48.26 | 46.63 |
| VIT_07s0104g01220.t01 | Wine grape | plastid | 47.09 | 45.0 |
| CDY22107 | Canola | plastid | 48.26 | 43.68 |
| AT4G03150.1 | Thale cress | plastid | 46.51 | 43.24 |
| Os12t0534100-01 | Rice | plastid | 43.02 | 43.02 |
| GSMUA_Achr2P02390_001 | Banana | plastid | 44.19 | 40.43 |
| EES17129 | Sorghum | plastid | 40.12 | 39.66 |
| TraesCS5B01G102100.1 | Wheat | plastid | 40.12 | 39.43 |
| KRG96366 | Soybean | cytosol | 46.51 | 38.84 |
| TraesCS5D01G108800.1 | Wheat | plastid | 38.95 | 38.07 |
| Zm00001d023888_P001 | Maize | plastid | 39.53 | 37.36 |
| TraesCS5A01G096200.1 | Wheat | nucleus | 41.28 | 33.33 |
| HORVU5Hr1G025950.6 | Barley | nucleus | 39.53 | 32.08 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400061795 | EnsemblPlantsGene:PGSC0003DMG400024042 | EntrezGene:102605653 | PANTHER:PTHR36776 | PANTHER:PTHR36776:SF1 | PGSC:PGSC0003DMG400024042 |
| RefSeq:XP_006352800.1 | UniParc:UPI000295840B | UniProt:M1C811 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024042]
Coordinates
chr6:-:59269996..59275269
Molecular Weight (calculated)
19611.4 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.148
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWPLLSPVS GCYCLRLSQL HVNLVQLQPI TRREIIHPSL HQCILFSVDR IRARLPLLNA QTNGSEQLIE DLRVPQQWLQ PSKALEESEW LQTALNKWLD
101: DEYCPEETNI EISKIAASSF YRSLLENKSD IGEILLTMAG DLESVSYQES FHGAFSSANA AVNLIIQRLE QY
101: DEYCPEETNI EISKIAASSF YRSLLENKSD IGEILLTMAG DLESVSYQES FHGAFSSANA AVNLIIQRLE QY
001: MSSWVCSSVT RNVVKSHPLS LTKHLDFPAT IRRRSVSFPA TIRRRSVSFP ITSAPKFPSL KLQKSQSSIH EGEEDSESAV QALTIPEEWL LPSRAIEESE
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
Arabidopsis Description
AT4g03150/F4C21_7 [Source:UniProtKB/TrEMBL;Acc:Q944G6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.