Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0656300-01 | |
| Os03t0710800-01 | |
| Os04t0654700-02 | |
| Os06t0679100-00 | |
| Os11t0546900-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G108800.1 | Wheat | plastid | 67.44 | 65.91 |
| TraesCS5B01G102100.1 | Wheat | plastid | 66.86 | 65.71 |
| EES17129 | Sorghum | plastid | 64.53 | 63.79 |
| Zm00001d023888_P001 | Maize | plastid | 61.05 | 57.69 |
| HORVU5Hr1G025950.6 | Barley | nucleus | 67.44 | 54.72 |
| TraesCS5A01G096200.1 | Wheat | nucleus | 62.79 | 50.7 |
| GSMUA_Achr2P02390_001 | Banana | plastid | 51.16 | 46.81 |
| CDY21946 | Canola | plastid | 46.51 | 44.94 |
| Solyc06g084470.2.1 | Tomato | plastid | 44.77 | 44.77 |
| Bra034190.1-P | Field mustard | plastid | 45.35 | 43.82 |
| AT4G03150.1 | Thale cress | plastid | 46.51 | 43.24 |
| PGSC0003DMT400061795 | Potato | extracellular, plastid | 43.02 | 43.02 |
| VIT_07s0104g01220.t01 | Wine grape | plastid | 44.19 | 42.22 |
| CDY22107 | Canola | plastid | 46.51 | 42.11 |
| KRG96366 | Soybean | cytosol | 45.35 | 37.86 |
Protein Annotations
| EMBL:AK071079 | EnsemblPlants:Os12t0534100-01 | EnsemblPlantsGene:Os12g0534100 | EntrezGene:4352412 | PANTHER:PTHR36776 | PANTHER:PTHR36776:SF1 |
| ProteinID:ABA98815.1 | ProteinID:BAF29948.1 | ProteinID:BAT17451.1 | ProteinID:EAZ20728.1 | RefSeq:XP_015618219.1 | SEG:seg |
| UniParc:UPI0000680F13 | UniProt:Q2QPD2 | MapMan:35.2 | : | : | : |
Description
Conserved hypothetical protein. (Os12t0534100-01)
Coordinates
chr12:-:21238294..21239733
Molecular Weight (calculated)
18359.3 Da
IEP (calculated)
5.015
GRAVY (calculated)
-0.388
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSTSVLSP LLAHAHGRAS PTSRAQPLIA SRLNLAGFSA SSPRRILPAP RASGGGGGGE EEDSRVQELR VPGSWLTPAG AAQESEWLRE TLHKWLDDEY
101: CPEPANVDIS NTAARSFYES LTAKESDLGE ILLKMVGDLQ KLSYKESFHG AFSAANAAVS LISQRMESSS DD
101: CPEPANVDIS NTAARSFYES LTAKESDLGE ILLKMVGDLQ KLSYKESFHG AFSAANAAVS LISQRMESSS DD
001: MSSWVCSSVT RNVVKSHPLS LTKHLDFPAT IRRRSVSFPA TIRRRSVSFP ITSAPKFPSL KLQKSQSSIH EGEEDSESAV QALTIPEEWL LPSRAIEESE
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
Arabidopsis Description
AT4g03150/F4C21_7 [Source:UniProtKB/TrEMBL;Acc:Q944G6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.