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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • cytosol 1
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 plastid: 20089766
plastid: 22065420
plastid: 23198870
msms PMID: 20089766 doi
G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d002027_P002
Zm00001d007446_P003
Zm00001d007968_P001
Zm00001d017434_P001
Zm00001d017475_P002
Zm00001d018856_P001
Zm00001d021885_P001
Zm00001d033357_P001
Zm00001d039042_P001
Zm00001d048554_P001
Zm00001d053090_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G03150.1 Zm00001d002027_P002 AT1G71230.1 21798944
AT4G03150.1 Zm00001d017475_P002 AT3G48150.1 21798944
AT4G03150.1 Zm00001d007446_P003 AT5G38480.1 21798944
AT4G03150.1 Zm00001d007968_P001 AT5G38480.1 21798944
AT4G03150.1 Zm00001d017434_P001 AT5G38480.1 21798944
AT4G03150.1 Zm00001d018856_P001 AT5G38480.1 21798944
AT4G03150.1 Zm00001d021885_P001 AT5G38480.1 21798944
AT4G03150.1 Zm00001d033357_P001 AT5G38480.1 21798944
AT4G03150.1 Zm00001d039042_P001 AT5G38480.1 21798944
AT4G03150.1 Zm00001d048554_P001 AT5G38480.1 21798944
AT4G03150.1 Zm00001d053090_P001 AT5G38480.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES17129 Sorghum plastid 79.67 83.33
TraesCS5D01G108800.1 Wheat plastid 60.44 62.5
Os12t0534100-01 Rice plastid 57.69 61.05
TraesCS5B01G102100.1 Wheat plastid 57.69 60.0
HORVU5Hr1G025950.6 Barley nucleus 62.64 53.77
TraesCS5A01G096200.1 Wheat nucleus 57.14 48.83
VIT_07s0104g01220.t01 Wine grape plastid 42.31 42.78
GSMUA_Achr2P02390_001 Banana plastid 41.21 39.89
PGSC0003DMT400061795 Potato extracellular, plastid 37.36 39.53
Solyc06g084470.2.1 Tomato plastid 37.36 39.53
CDY21946 Canola plastid 37.91 38.76
AT4G03150.1 Thale cress plastid 38.46 37.84
Bra034190.1-P Field mustard plastid 36.81 37.64
CDY22107 Canola plastid 37.91 36.32
KRG96366 Soybean cytosol 39.56 34.95
Protein Annotations
EnsemblPlants:Zm00001d023888_P001EnsemblPlants:Zm00001d023888_T001EnsemblPlantsGene:Zm00001d023888PANTHER:PTHR36776PANTHER:PTHR36776:SF1ProteinID:AQK40328.1
UniParc:UPI000844D363UniProt:A0A1D6IWN1MapMan:35.2:::
Description
No Description!
Coordinates
chr10:+:26416953..26419954
Molecular Weight (calculated)
20599.3 Da
IEP (calculated)
6.685
GRAVY (calculated)
-0.495
Length
182 amino acids
Sequence
(BLAST)
001: MLSSTSLAAL LHGRPHYPFR PSKAHLFLAL PNNPTRFLAS ASVRVAYPPR WHLRAADGER DNRVQELRVP DSWLTPAGAT QRNLPPFFAD RQESEWLRET
101: LRKWLDDEYC PEPANVDISS TAARSYRESL IAGQSDLGEI LLRMVGDLDK LSYRESFHGP FSAANAAVRL IAQRMEESLP DE
Best Arabidopsis Sequence Match ( AT4G03150.1 )
(BLAST)
001: MSSWVCSSVT RNVVKSHPLS LTKHLDFPAT IRRRSVSFPA TIRRRSVSFP ITSAPKFPSL KLQKSQSSIH EGEEDSESAV QALTIPEEWL LPSRAIEESE
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
Arabidopsis Description
AT4g03150/F4C21_7 [Source:UniProtKB/TrEMBL;Acc:Q944G6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.