Factsheet for VIT_00s0396g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45552	Canola	cytosol	85.08	85.08
ATMG00290.1	Thale cress	cytosol	84.81	84.81
AT2G07734.1	Thale cress	cytosol	84.81	84.81
HORVU0Hr1G011520.1	Barley	mitochondrion	77.9	78.99
TraesCSU01G147800.1	Wheat	mitochondrion	77.07	78.15
BAC19883	Rice	mitochondrion	75.97	78.12
TraesCSU01G177800.1	Wheat	mitochondrion	76.8	77.87
TraesCS6B01G338300.1	Wheat	mitochondrion	75.97	77.03
PGSC0003DMT400083810	Potato	cytosol	37.85	76.97
GRMZM5G849223_P01	Maize	plastid	75.14	75.98
TraesCS3B01G516800.1	Wheat	mitochondrion	75.69	75.9
TraesCS5A01G503000.1	Wheat	mitochondrion	74.59	75.63
TraesCS2B01G283500.1	Wheat	mitochondrion	75.14	75.35
Solyc01g017630.1.1	Tomato	cytosol	23.48	75.22
HORVU4Hr1G059510.1	Barley	mitochondrion	16.02	74.36
BAV58141	Barley	mitochondrion	77.9	73.63
TraesCS6D01G092500.1	Wheat	cytosol	72.38	72.58
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	37.02	67.0
Solyc11g030940.1.1	Tomato	cytosol, plastid	31.22	65.7
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	17.13	63.27
Zm00001d004058_P001	Maize	cytosol	72.65	60.88
TraesCS1B01G262700.1	Wheat	nucleus	27.07	53.55
OQU81276	Sorghum	cytosol	17.4	47.37

Protein Annotations

EntrezGene:104878382	MapMan:17.7.1.2.3	Gene3D:3.10.290.10	EntrezGene:7498552	wikigene:7498552	ProteinID:ACS15201
ProteinID:ACS15201.1	ProteinID:CAQ77661	ProteinID:CAQ77661.1	ProteinID:CCB57399	ProteinID:CCB57399.1	UniProt:F6HRU1
EMBL:FM179380	EMBL:FN596039	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	GO:GO:0045903	EMBL:GQ220323
InterPro:IPR002942	InterPro:IPR036986	PFAM:PF01479	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF12
InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SUPFAM:SSF55174	TIGR:TC59444
UniParc:UPI00019842D4	ArrayExpress:VIT_00s0396g00050	EnsemblPlantsGene:VIT_00s0396g00050	EnsemblPlants:VIT_00s0396g00050.t01	unigene:Vvi.25418	RefSeq:XP_010646951.1
EntrezGene:rps4	wikigene:rps4	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:27348203..27350819

Molecular Weight (calculated)

43084.7 Da

IEP (calculated)

11.672

GRAVY (calculated)

-0.741

Length

362 amino acids

Sequence
(BLAST)

001: MWRKRLIQPD LRPTLPALRF KTCRLLPGNV RNRELTIIQR RILRRLRNKK RSIKRKIYPR DNLNSYIQSQ TTRKLPLFHG DLPITEMHRG TERNSYILFP
101: LNLETRSDVI PVRLHFCETI PQARQPISHR RVCVNNRMVS ITHLKVSHGD IISFQENDAR IRGEEIRRSF YIEISVEKII GKFLDHLVRM WRKTKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHN RIKRNLYHFK SLFLSKRRNE KNRNLPTRTR SPIVYNSSLY SNSTYCSASP
301: HQFTMKRRIK RIELPTHYSE VNHRTPKVVV SYGPNIGHIP HDIRLKDPNL PLRSGNGRGQ NI

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.