Factsheet for HORVU4Hr1G023940.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

mitochondrion 3
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G059510.1	Barley	mitochondrion	35.5	91.03
Solyc01g017630.1.1	Tomato	cytosol	35.5	62.83
TraesCS1B01G262700.1	Wheat	nucleus	54.5	59.56
Solyc11g030940.1.1	Tomato	cytosol, plastid	47.0	54.65
HORVU0Hr1G011520.1	Barley	mitochondrion	90.5	50.7
BAV58141	Barley	mitochondrion	90.5	47.26
BAC19883	Rice	mitochondrion	82.0	46.59
PGSC0003DMT400083810	Potato	cytosol	41.0	46.07
GRMZM5G849223_P01	Maize	plastid	82.0	45.81
VIT_00s0396g00050.t01	Wine grape	mitochondrion	67.0	37.02
Zm00001d004058_P001	Maize	cytosol	76.0	35.19
CDY45552	Canola	cytosol	60.5	33.43
AT2G07734.1	Thale cress	cytosol	59.5	32.87
ATMG00290.1	Thale cress	cytosol	59.5	32.87
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	4.5	9.18
OQU81276	Sorghum	cytosol	2.0	3.01

Protein Annotations

EnsemblPlants:HORVU4Hr1G023940.1	EnsemblPlantsGene:HORVU4Hr1G023940	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR002942	InterPro:IPR036986	InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf
PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	PFAM:PF01479	SEG:seg	SUPFAM:SSF55174	UniParc:UPI000B486CEB
UniProt:A0A287NJL4	MapMan:17.7.1.2.3	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:134553823..134554932

Molecular Weight (calculated)

23452.0 Da

IEP (calculated)

12.149

GRAVY (calculated)

-0.475

Length

200 amino acids

Sequence
(BLAST)

001: MPALRFKTCR LLPGNVRNRE LSLIQRRILR RLRNKRRSIK INLSRRENLN TNIKSQTTQK LSLYYGDLPI REMHRGRERT SYIPFLLHQE TRSDVIPVRL
101: HFSDTLPQAR QPITHRRVCL NNGLVTITHL EVSHGDLIYF KENDARTRGF EIRRSFYIDI SVGKIIGKFL PAISVGKRRG KFLPAISVGK RRGKFLLARI

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.