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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 5
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_00s0396g00050.t01 Wine grape mitochondrion 63.27 17.13
HORVU0Hr1G011520.1 Barley mitochondrion 61.22 16.81
BAC19883 Rice mitochondrion 60.2 16.76
ATMG00290.1 Thale cress cytosol 61.22 16.57
CDY45552 Canola cytosol 61.22 16.57
AT2G07734.1 Thale cress cytosol 61.22 16.57
TraesCSU01G177800.1 Wheat mitochondrion 60.2 16.53
TraesCSU01G147800.1 Wheat mitochondrion 60.2 16.53
TraesCS2B01G283500.1 Wheat mitochondrion 60.2 16.34
TraesCS3B01G516800.1 Wheat mitochondrion 60.2 16.34
TraesCS6B01G338300.1 Wheat mitochondrion 59.18 16.25
TraesCS5A01G503000.1 Wheat mitochondrion 59.18 16.25
GRMZM5G849223_P01 Maize plastid 59.18 16.2
BAV58141 Barley mitochondrion 61.22 15.67
TraesCS6D01G092500.1 Wheat cytosol 57.14 15.51
Zm00001d004058_P001 Maize cytosol 59.18 13.43
OQU81276 Sorghum cytosol 12.24 9.02
TraesCS1B01G262700.1 Wheat nucleus 16.33 8.74
Solyc01g017630.1.1 Tomato cytosol 9.18 7.96
Solyc11g030940.1.1 Tomato cytosol, plastid 8.16 4.65
HORVU4Hr1G023940.1 Barley mitochondrion, peroxisome 9.18 4.5
HORVU4Hr1G059510.1 Barley mitochondrion 2.04 2.56
Protein Annotations
EnsemblPlants:Solyc10g045740.1.1EnsemblPlantsGene:Solyc10g045740.1SEG:segUniParc:UPI0002769A38UniProt:K4CZT8MapMan:35.1
Description
No Description!
Coordinates
chr10:-:35901104..35901821
Molecular Weight (calculated)
11349.8 Da
IEP (calculated)
10.975
GRAVY (calculated)
-0.782
Length
98 amino acids
Sequence
(BLAST)
1: MKRRNEKNQN IPNRIRIPIV HNSSLYSNLT YCSAPPHKFS KYIKIKKIEL PTQCSKINYR TPKAIVSYGP NIGHIPHNIR LTDPNFLHWS GNGRGQNI
Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)
001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI
Arabidopsis Description
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.