Factsheet for TraesCS6B01G338300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G177800.1	Wheat	mitochondrion	98.32	98.32
TraesCS3B01G516800.1	Wheat	mitochondrion	97.76	96.68
TraesCS2B01G283500.1	Wheat	mitochondrion	97.2	96.12
HORVU0Hr1G011520.1	Barley	mitochondrion	95.8	95.8
TraesCS5A01G503000.1	Wheat	mitochondrion	94.68	94.68
HORVU4Hr1G059510.1	Barley	mitochondrion	20.45	93.59
BAV58141	Barley	mitochondrion	96.92	90.34
BAC19883	Rice	mitochondrion	87.68	88.92
GRMZM5G849223_P01	Maize	plastid	88.24	87.99
VIT_00s0396g00050.t01	Wine grape	mitochondrion	77.03	75.97
TraesCS1B01G262700.1	Wheat	nucleus	38.38	74.86
CDY45552	Canola	cytosol	73.11	72.1
Solyc01g017630.1.1	Tomato	cytosol	22.69	71.68
ATMG00290.1	Thale cress	cytosol	72.27	71.27
AT2G07734.1	Thale cress	cytosol	72.27	71.27
PGSC0003DMT400083810	Potato	cytosol	35.01	70.22
Zm00001d004058_P001	Maize	cytosol	84.87	70.14
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	16.25	59.18
Solyc11g030940.1.1	Tomato	cytosol, plastid	28.29	58.72
OQU81276	Sorghum	cytosol	20.17	54.14

Protein Annotations

EnsemblPlants:TraesCS6B01G338300.1	EnsemblPlantsGene:TraesCS6B01G338300	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR002942	InterPro:IPR036986	InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf
ncoils:Coil	PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	PFAM:PF01479	PFscan:PS50889	SEG:seg
SMART:SM00363	SUPFAM:SSF55174	TIGR:cd00165	MapMan:17.7.1.2.3	:	:

Description

No Description!

Coordinates

chr6B:-:596594164..596595237

Molecular Weight (calculated)

42201.7 Da

IEP (calculated)

11.972

GRAVY (calculated)

-0.724

Length

357 amino acids

Sequence
(BLAST)

001: MPALRFKTCR LLPGNVRNRE LSLIQRRILR RLRNKRRSIK RNLSRRENRN SNIKSQTTRK LSLYYGDLPI REMHRGRELT SYIPFLLNQE TRSDVIPVRL
101: HFSDTLPQAR QPISHRRVCL NNGLVTITHL KVSHGDLISF KENDARTRGF EIRRSFYIDI SVGKIIGKFL SAISVGKRRG KFLPARIWRR TKKEWFRLLT
201: TQRGCRLLLK SKELQNLRSY MQEEDFERTK KFGSAKVCLG SSFAEHNRMK RNLFHFKYFF LLKRGKEKNR NLPTRTISPF VEKSSLYSNS TYCSGSPFTR
301: KIRIKRIELP THYSEVNHRT LKAVVSYGRN IGHIPHDIRL KDPNLPLRSG NRRGQNI

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.