Factsheet for TraesCS2B01G283500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G516800.1	Wheat	mitochondrion	97.23	97.23
TraesCSU01G147800.1	Wheat	mitochondrion	96.12	97.2
TraesCS6B01G338300.1	Wheat	mitochondrion	96.12	97.2
HORVU0Hr1G011520.1	Barley	mitochondrion	93.91	94.96
TraesCS5A01G503000.1	Wheat	mitochondrion	93.07	94.12
HORVU4Hr1G059510.1	Barley	mitochondrion	19.94	92.31
BAV58141	Barley	mitochondrion	95.01	89.56
TraesCS6D01G092500.1	Wheat	cytosol	89.2	89.2
BAC19883	Rice	mitochondrion	85.87	88.07
GRMZM5G849223_P01	Maize	plastid	86.43	87.15
VIT_00s0396g00050.t01	Wine grape	mitochondrion	75.35	75.14
Solyc01g017630.1.1	Tomato	cytosol	22.99	73.45
TraesCS1B01G262700.1	Wheat	nucleus	37.12	73.22
CDY45552	Canola	cytosol	72.02	71.82
ATMG00290.1	Thale cress	cytosol	71.19	70.99
AT2G07734.1	Thale cress	cytosol	71.19	70.99
Zm00001d004058_P001	Maize	cytosol	83.66	69.91
PGSC0003DMT400083810	Potato	cytosol	34.35	69.66
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	16.34	60.2
Solyc11g030940.1.1	Tomato	cytosol, plastid	27.7	58.14
OQU81276	Sorghum	cytosol	19.39	52.63

Protein Annotations

EnsemblPlants:TraesCS2B01G283500.1	EnsemblPlantsGene:TraesCS2B01G283500	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR002942	InterPro:IPR036986	InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf
ncoils:Coil	PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	PFAM:PF01479	SEG:seg	SUPFAM:SSF55174
TIGR:cd00165	MapMan:17.7.1.2.3	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:391151411..391152496

Molecular Weight (calculated)

42597.2 Da

IEP (calculated)

11.872

GRAVY (calculated)

-0.684

Length

361 amino acids

Sequence
(BLAST)

001: MKYAMPAIRF KTCRLLPGNV RNRELSLIQR RILRRLRNKR RSIKRNLSRR ENRNSNIKSQ TTRKLSLYYG DLPIREMHRG RERTSYIPFL LNQETRSDVI
101: PVRLHFSDTL PQARQPISHL RVCLNNGLVT ITHLKVSHGD LISFKENDAR TRGFEIMRSF YIDISVGKII GKFLSAISVG KRRGKFLPAR IWRRTKKEWF
201: RLLTTQRGCR LLLKSKELQK LRSYIQEEDF ERTKKFGSAK VCLGSSFAEH NRMKRNLFHF KYFFLLKRGK EKNRNLPTRT ISSFVEKSSL YSNSTYCSGS
301: PFTRKIRIKR IELPTHYSEV NHRTLKAVVS YGPNIGHIPH DIRLKDPNLP LRSRNGRGQN I

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.