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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • nucleus 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCSU01G147800.1 Wheat mitochondrion 89.2 90.2
TraesCS3B01G516800.1 Wheat mitochondrion 90.03 90.03
TraesCS2B01G283500.1 Wheat mitochondrion 89.2 89.2
HORVU0Hr1G011520.1 Barley mitochondrion 88.09 89.08
TraesCS5A01G503000.1 Wheat mitochondrion 87.26 88.24
BAV58141 Barley mitochondrion 88.92 83.81
BAC19883 Rice mitochondrion 80.06 82.1
GRMZM5G849223_P01 Maize plastid 80.61 81.28
HORVU4Hr1G059510.1 Barley mitochondrion 15.79 73.08
VIT_00s0396g00050.t01 Wine grape mitochondrion 72.58 72.38
CDY45552 Canola cytosol 69.25 69.06
ATMG00290.1 Thale cress cytosol 68.42 68.23
AT2G07734.1 Thale cress cytosol 68.42 68.23
Zm00001d004058_P001 Maize cytosol 77.84 65.05
PGSC0003DMT400083810 Potato cytosol 31.02 62.92
Solyc01g017630.1.1 Tomato cytosol 19.39 61.95
Solyc10g045740.1.1 Tomato cytosol, mitochondrion 15.51 57.14
OQU81276 Sorghum cytosol 19.67 53.38
Solyc11g030940.1.1 Tomato cytosol, plastid 23.55 49.42
Protein Annotations
EnsemblPlants:TraesCS6D01G092500.1EnsemblPlantsGene:TraesCS6D01G092500Gene3D:3.10.290.10GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488InterPro:IPR002942InterPro:IPR036986InterPro:Ribosomal_S4/S9InterPro:S4_RNA-bdInterPro:S4_RNA-bd_sf
ncoils:CoilPANTHER:PTHR11831PANTHER:PTHR11831:SF12PFAM:PF01479SEG:segSUPFAM:SSF55174
TIGR:cd00165MapMan:17.7.1.2.3::::
Description
No Description!
Coordinates
chr6D:-:57934511..57935630
Molecular Weight (calculated)
42418.8 Da
IEP (calculated)
11.537
GRAVY (calculated)
-0.710
Length
361 amino acids
Sequence
(BLAST)
001: MWRKKTDSTK YDMPALRFKT CRLLTGNVRN RELSLIQRRI LRRLRNKRRS IKRNLSRRKN LNGNIKSQTT QKLCTGEENE LHIYIYIPIL LNQETRSDVI
101: PVHLHFSDTL PQARQPISPR RVCLNNGLVT IAHLKVSHGD LISFKENDAR TRGFEIRRSF YMDISVGKII GKFLSDISVG KRRGKFLPAR IWRRTKNEWF
201: RLLTTQRGCH LLLKSKELQK LRSYMQEEDF ERTKKFGSAK VCLGSSFGEH NRMKRNLFHF KYFFLLKRGK EKNRNLPTRT ISPFVEKSSL YSNSTYCSGS
301: PFTRKIRIKR IELPTHYSEV NHRTLKAVVS YGPNIGHIPH DIRLKDPNLP LRSGNGRGQN I
Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)
001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI
Arabidopsis Description
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.