Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 6
- plastid 1
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
18453340
plastid: 20089766 plastid: 22065420 plastid: 23198870 mitochondrion: 27297264 plasma membrane: 27341663 mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
20089766
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
BAC19883 | Rice | mitochondrion | 92.46 | 94.03 |
HORVU4Hr1G059510.1 | Barley | mitochondrion | 20.39 | 93.59 |
HORVU0Hr1G011520.1 | Barley | mitochondrion | 89.66 | 89.92 |
TraesCSU01G177800.1 | Wheat | mitochondrion | 88.83 | 89.08 |
TraesCS6B01G338300.1 | Wheat | mitochondrion | 87.99 | 88.24 |
TraesCSU01G147800.1 | Wheat | mitochondrion | 87.99 | 88.24 |
TraesCS3B01G516800.1 | Wheat | mitochondrion | 87.71 | 86.98 |
TraesCS2B01G283500.1 | Wheat | mitochondrion | 87.15 | 86.43 |
TraesCS5A01G503000.1 | Wheat | mitochondrion | 86.03 | 86.27 |
BAV58141 | Barley | mitochondrion | 89.66 | 83.81 |
HORVU4Hr1G023940.1 | Barley | mitochondrion, peroxisome | 45.81 | 82.0 |
TraesCS6D01G092500.1 | Wheat | cytosol | 81.28 | 80.61 |
Zm00001d004058_P001 | Maize | cytosol | 96.65 | 80.09 |
VIT_00s0396g00050.t01 | Wine grape | mitochondrion | 75.98 | 75.14 |
OQU81276 | Sorghum | cytosol | 27.65 | 74.44 |
Solyc01g017630.1.1 | Tomato | cytosol | 23.18 | 73.45 |
PGSC0003DMT400083810 | Potato | cytosol | 36.31 | 73.03 |
CDY45552 | Canola | cytosol | 72.07 | 71.27 |
ATMG00290.1 | Thale cress | cytosol | 71.79 | 70.99 |
AT2G07734.1 | Thale cress | cytosol | 71.79 | 70.99 |
TraesCS1B01G262700.1 | Wheat | nucleus | 32.68 | 63.93 |
Solyc11g030940.1.1 | Tomato | cytosol, plastid | 28.77 | 59.88 |
Solyc10g045740.1.1 | Tomato | cytosol, mitochondrion | 16.2 | 59.18 |
Protein Annotations
MapMan:17.7.1.2.3 | Gene3D:3.10.290.10 | EntrezGene:4055864 | ProteinID:AAR91054.1 | ncoils:Coil | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005840 | EnsemblPlantsGene:GRMZM5G849223 | EnsemblPlants:GRMZM5G849223_P01 | EnsemblPlants:GRMZM5G849223_T01 |
InterPro:IPR002942 | InterPro:IPR036986 | PFAM:PF01479 | PFscan:PS50889 | PANTHER:PTHR11831 | PANTHER:PTHR11831:SF12 |
UniProt:Q6R9N5 | InterPro:Ribosomal_S4/S9 | InterPro:S4_RNA-bd | InterPro:S4_RNA-bd_sf | SMART:SM00363 | SUPFAM:SSF55174 |
UniParc:UPI0000233EE3 | SEG:seg | : | : | : | : |
Description
Ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:Q6R9N5]
Coordinates
chrMt:+:19813..20889
Molecular Weight (calculated)
42523.8 Da
IEP (calculated)
11.448
GRAVY (calculated)
-0.725
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MPALRFKTCR LLPGNVRNRE LSLIQRRILR RLRNKRRSIK RNLSQRENLN SNIKSQTTRK LSLYYGDLPI REMHRGRERT SYIPFLLNQE TRSDVIPVRL
101: RFSDTLPQAR QPISHRRVCL NNGLVTITHF KVSHGDLISF KENDARTRGE EIRRSFYIDI SVGKIIGKFL PVRIWRRTKT EWFRLLTTQR GCRLLLKSGF
201: LQELRSYMQE EDLERTKKFG SAKVCLGSSF AEHNRMKRNL FHFKYFFLWK RRKEEEEGVE EILKVIEENE NRKRAISPFV YTNKLYRNST YCSGSPFTIT
301: RKIRIKRIEL PTHYSEVNHR TLKAVVSYGP NIGHIPHDIR LKDPNLPLRS GNGRGQNI
101: RFSDTLPQAR QPISHRRVCL NNGLVTITHF KVSHGDLISF KENDARTRGE EIRRSFYIDI SVGKIIGKFL PVRIWRRTKT EWFRLLTTQR GCRLLLKSGF
201: LQELRSYMQE EDLERTKKFG SAKVCLGSSF AEHNRMKRNL FHFKYFFLWK RRKEEEEGVE EILKVIEENE NRKRAISPFV YTNKLYRNST YCSGSPFTIT
301: RKIRIKRIEL PTHYSEVNHR TLKAVVSYGP NIGHIPHDIR LKDPNLPLRS GNGRGQNI
001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI
Arabidopsis Description
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.