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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • mitochondrion 6
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
plastid: 18453340
plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 20089766 doi
G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 29575040 doi
WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
msms PMID: 18453340 doi
W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
BAC19883 Rice mitochondrion 92.46 94.03
HORVU4Hr1G059510.1 Barley mitochondrion 20.39 93.59
HORVU0Hr1G011520.1 Barley mitochondrion 89.66 89.92
TraesCSU01G177800.1 Wheat mitochondrion 88.83 89.08
TraesCS6B01G338300.1 Wheat mitochondrion 87.99 88.24
TraesCSU01G147800.1 Wheat mitochondrion 87.99 88.24
TraesCS3B01G516800.1 Wheat mitochondrion 87.71 86.98
TraesCS2B01G283500.1 Wheat mitochondrion 87.15 86.43
TraesCS5A01G503000.1 Wheat mitochondrion 86.03 86.27
BAV58141 Barley mitochondrion 89.66 83.81
HORVU4Hr1G023940.1 Barley mitochondrion, peroxisome 45.81 82.0
TraesCS6D01G092500.1 Wheat cytosol 81.28 80.61
Zm00001d004058_P001 Maize cytosol 96.65 80.09
VIT_00s0396g00050.t01 Wine grape mitochondrion 75.98 75.14
OQU81276 Sorghum cytosol 27.65 74.44
Solyc01g017630.1.1 Tomato cytosol 23.18 73.45
PGSC0003DMT400083810 Potato cytosol 36.31 73.03
CDY45552 Canola cytosol 72.07 71.27
ATMG00290.1 Thale cress cytosol 71.79 70.99
AT2G07734.1 Thale cress cytosol 71.79 70.99
TraesCS1B01G262700.1 Wheat nucleus 32.68 63.93
Solyc11g030940.1.1 Tomato cytosol, plastid 28.77 59.88
Solyc10g045740.1.1 Tomato cytosol, mitochondrion 16.2 59.18
Protein Annotations
MapMan:17.7.1.2.3Gene3D:3.10.290.10EntrezGene:4055864ProteinID:AAR91054.1ncoils:CoilGO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0005840EnsemblPlantsGene:GRMZM5G849223EnsemblPlants:GRMZM5G849223_P01EnsemblPlants:GRMZM5G849223_T01
InterPro:IPR002942InterPro:IPR036986PFAM:PF01479PFscan:PS50889PANTHER:PTHR11831PANTHER:PTHR11831:SF12
UniProt:Q6R9N5InterPro:Ribosomal_S4/S9InterPro:S4_RNA-bdInterPro:S4_RNA-bd_sfSMART:SM00363SUPFAM:SSF55174
UniParc:UPI0000233EE3SEG:seg::::
Description
Ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:Q6R9N5]
Coordinates
chrMt:+:19813..20889
Molecular Weight (calculated)
42523.8 Da
IEP (calculated)
11.448
GRAVY (calculated)
-0.725
Length
358 amino acids
Sequence
(BLAST)
001: MPALRFKTCR LLPGNVRNRE LSLIQRRILR RLRNKRRSIK RNLSQRENLN SNIKSQTTRK LSLYYGDLPI REMHRGRERT SYIPFLLNQE TRSDVIPVRL
101: RFSDTLPQAR QPISHRRVCL NNGLVTITHF KVSHGDLISF KENDARTRGE EIRRSFYIDI SVGKIIGKFL PVRIWRRTKT EWFRLLTTQR GCRLLLKSGF
201: LQELRSYMQE EDLERTKKFG SAKVCLGSSF AEHNRMKRNL FHFKYFFLWK RRKEEEEGVE EILKVIEENE NRKRAISPFV YTNKLYRNST YCSGSPFTIT
301: RKIRIKRIEL PTHYSEVNHR TLKAVVSYGP NIGHIPHDIR LKDPNLPLRS GNGRGQNI
Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)
001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI
Arabidopsis Description
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.