CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G011520.1	Barley	mitochondrion	93.21	100.0
TraesCSU01G177800.1	Wheat	mitochondrion	91.12	97.76
TraesCS6B01G338300.1	Wheat	mitochondrion	90.34	96.92
TraesCSU01G147800.1	Wheat	mitochondrion	90.08	96.64
TraesCS3B01G516800.1	Wheat	mitochondrion	90.08	95.57
TraesCS2B01G283500.1	Wheat	mitochondrion	89.56	95.01
HORVU4Hr1G059510.1	Barley	mitochondrion	19.32	94.87
TraesCS5A01G503000.1	Wheat	mitochondrion	87.99	94.4
BAC19883	Rice	mitochondrion	83.29	90.62
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	47.26	90.5
GRMZM5G849223_P01	Maize	plastid	83.81	89.66
TraesCS6D01G092500.1	Wheat	cytosol	83.81	88.92
VIT_00s0396g00050.t01	Wine grape	mitochondrion	73.63	77.9
CDY45552	Canola	cytosol	69.45	73.48
AT2G07734.1	Thale cress	cytosol	68.67	72.65
ATMG00290.1	Thale cress	cytosol	68.67	72.65
Solyc01g017630.1.1	Tomato	cytosol	21.41	72.57
Zm00001d004058_P001	Maize	cytosol	80.68	71.53
PGSC0003DMT400083810	Potato	cytosol	32.9	70.79
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	15.67	61.22
Solyc11g030940.1.1	Tomato	cytosol, plastid	26.37	58.72
OQU81276	Sorghum	cytosol	18.8	54.14

Protein Annotations

MapMan:17.7.1.2.3	Gene3D:3.10.290.10	ENA:AP017301.1:CDS:202936..204087	EnsemblPlants:BAV58141	ProteinID:BAV58141	ProteinID:BAV58141.1
ncoils:Coil	EnsemblPlantsGene:EPlHVUG00000039883	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840
InterPro:IPR002942	InterPro:IPR036986	GO:M0Z3C2	UniProt:M0Z3C2	PFAM:PF01479	PFscan:PS50889
PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363
SUPFAM:SSF55174	UniParc:UPI000294C036	SEG:seg	:	:	:

Description

ribosomal protein small subunit 4

Coordinates

chrMt:+:202936..204087

Molecular Weight (calculated)

44954.3 Da

IEP (calculated)

12.035

GRAVY (calculated)

-0.601

Length

383 amino acids

Sequence
(BLAST)

001: MPALRFKTCR LLPGNVRNRE LSLIQRRILR RLRNKRRSIK RNLSRRENLN SNIKSQTTRK LSLYYGDLPI REMHRGRERT SYIPFLLNQE TRSDVIPVRL
101: HFSDTLPQAR QPISHRRVCL NNGLVTITHL KVSHGDLISF KENDARTRGF EIRRSFYIDI SVGKIIGKFL SAISVGKRRG KFLPAISVGK RRGKFLPAIS
201: VGKRRGKFLL ARIWRRTKTE WFRLLTTQRG CRLLLKSLFL QELRSYMQEE YFERTKKFGS AKVCLGSSFA EHNRMKRNLF HFKYFFLLKR GKEKNRNLPT
301: RTISPFVYKS SLYSNSTYCS GSPFTRKIRI KRIELPTHYS EVNHRTLKAV VSYGPNIGHI PHDIRLKDPN LPLRSGNGRG QNI

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.