Factsheet for Solyc11g030940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g017630.1.1	Tomato	cytosol	38.95	59.29
HORVU4Hr1G059510.1	Barley	mitochondrion	23.84	52.56
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	54.65	47.0
PGSC0003DMT400083810	Potato	cytosol	43.6	42.13
TraesCS1B01G262700.1	Wheat	nucleus	38.95	36.61
VIT_00s0396g00050.t01	Wine grape	mitochondrion	65.7	31.22
BAC19883	Rice	mitochondrion	60.47	29.55
ATMG00290.1	Thale cress	cytosol	61.63	29.28
AT2G07734.1	Thale cress	cytosol	61.63	29.28
CDY45552	Canola	cytosol	61.05	29.01
GRMZM5G849223_P01	Maize	plastid	59.88	28.77
TraesCS3B01G516800.1	Wheat	mitochondrion	59.88	28.53
HORVU0Hr1G011520.1	Barley	mitochondrion	58.72	28.29
TraesCS6B01G338300.1	Wheat	mitochondrion	58.72	28.29
TraesCSU01G147800.1	Wheat	mitochondrion	58.72	28.29
TraesCSU01G177800.1	Wheat	mitochondrion	58.72	28.29
TraesCS5A01G503000.1	Wheat	mitochondrion	57.56	27.73
TraesCS2B01G283500.1	Wheat	mitochondrion	58.14	27.7
BAV58141	Barley	mitochondrion	58.72	26.37
Zm00001d004058_P001	Maize	cytosol	59.88	23.84
TraesCS6D01G092500.1	Wheat	cytosol	49.42	23.55
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	4.65	8.16
OQU81276	Sorghum	cytosol	0.0	0.0

Protein Annotations

MapMan:17.7.1.2.3	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	GO:GO:0045903	InterPro:IPR002942	InterPro:IPR036986
UniProt:K4D7M8	PFAM:PF01479	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	InterPro:Ribosomal_S4/S9
InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SUPFAM:SSF55174	EnsemblPlantsGene:Solyc11g030940.1	EnsemblPlants:Solyc11g030940.1.1
UniParc:UPI0002769AE4	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:23462157..23462787

Molecular Weight (calculated)

20255.6 Da

IEP (calculated)

9.973

GRAVY (calculated)

-0.319

Length

172 amino acids

Sequence
(BLAST)

001: MGASQNLLLR SCWIEVVHYS SARNVWNNEL TIIQCCILGR LRNKKRSIKR KIYSRENINS YIQSQTTRNL SLFYGYLTIT EMHRGRQQTL YIPFLLNTET
101: RSDLIPVHLN FCETIRKARQ PISHRRVCVN NLMVKITHFK LSHGDIISFQ ENDVKTIGEE IKGSFYIEIS FE

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.