CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G059510.1	Barley	mitochondrion	20.74	93.59
GRMZM5G849223_P01	Maize	plastid	94.03	92.46
HORVU0Hr1G011520.1	Barley	mitochondrion	90.62	89.36
TraesCSU01G177800.1	Wheat	mitochondrion	89.77	88.52
TraesCS6B01G338300.1	Wheat	mitochondrion	88.92	87.68
TraesCSU01G147800.1	Wheat	mitochondrion	88.64	87.39
TraesCS3B01G516800.1	Wheat	mitochondrion	88.64	86.43
TraesCS2B01G283500.1	Wheat	mitochondrion	88.07	85.87
TraesCS5A01G503000.1	Wheat	mitochondrion	86.93	85.71
BAV58141	Barley	mitochondrion	90.62	83.29
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	46.59	82.0
TraesCS6D01G092500.1	Wheat	cytosol	82.1	80.06
VIT_00s0396g00050.t01	Wine grape	mitochondrion	78.12	75.97
Zm00001d004058_P001	Maize	cytosol	90.62	73.84
Solyc01g017630.1.1	Tomato	cytosol	23.58	73.45
PGSC0003DMT400083810	Potato	cytosol	36.36	71.91
CDY45552	Canola	cytosol	73.86	71.82
ATMG00290.1	Thale cress	cytosol	73.01	70.99
AT2G07734.1	Thale cress	cytosol	73.01	70.99
OQU81276	Sorghum	cytosol	23.58	62.41
TraesCS1B01G262700.1	Wheat	nucleus	32.39	62.3
Solyc11g030940.1.1	Tomato	cytosol, plastid	29.55	60.47
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	16.76	60.2

Protein Annotations

MapMan:17.7.1.2.3	Gene3D:3.10.290.10	EntrezGene:6450179	ProteinID:AAZ99316.1	ProteinID:AAZ99369.1	EnsemblPlants:BAC19883
EnsemblPlantsGene:BAC19883	ProteinID:BAC19883	ProteinID:BAC19883.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005840	InterPro:IPR002942	InterPro:IPR036986	PFAM:PF01479	PFscan:PS50889
PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	UniProt:Q2F8W8	UniProt:Q8HCN9	Reactome:R-HSA-156827	Reactome:R-HSA-156902
Reactome:R-HSA-1799339	Reactome:R-HSA-192823	Reactome:R-HSA-2408557	Reactome:R-HSA-6790901	Reactome:R-HSA-6791226	Reactome:R-HSA-72649
Reactome:R-HSA-72689	Reactome:R-HSA-72695	Reactome:R-HSA-72702	Reactome:R-HSA-72706	Reactome:R-HSA-72764	Reactome:R-HSA-975956
Reactome:R-HSA-975957	InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SUPFAM:SSF55174
UniParc:UPI000008D6D5	UniParc:UPI0000D5C07A	RefSeq:YP_002000578.1	SEG:seg	:	:

Description

rps4Ribosomal protein S4

Coordinates

chrMt:-:248580..249638

Molecular Weight (calculated)

41768.0 Da

IEP (calculated)

11.498

GRAVY (calculated)

-0.677

Length

352 amino acids

Sequence
(BLAST)

001: MPALRFKTCR LLPGNVRNRE LSLIQRRILR RLRNKRRSIK RNLSQRENLN SNIKSQTTRK LSLYYGDLPI REMHRGRERT SYIPFLLNQE TRSDVIPVRL
101: HFCDTLPQAR QPISHRRVCL NNGLVTITHL KVSHGDLISF QENDARTRGE EIRRSFYIDI SVGKIIGKLL PVRIWRKTKT EWFRLLTTQR VCRLLLKSWF
201: LQELRSYMQE EDLERTKKFG SAKVCLGSSF AEHNRMKRNL FHFKYFFLLK RRKEEEELIR TIGEAENRKR AISPFVYKSS LYRNSTYCSG SPFTRKIRIK
301: RIELPTHYSE VNHRTLKAVV SYGPNIGHIP HDIRLKDPNL PLRSGNGRGQ NI

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.