CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 5
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
ATMG00290.1	Thale cress	cytosol	99.17	99.17
AT2G07734.1	Thale cress	cytosol	99.17	99.17
VIT_00s0396g00050.t01	Wine grape	mitochondrion	85.08	85.08
PGSC0003DMT400083810	Potato	cytosol	36.74	74.72
HORVU0Hr1G011520.1	Barley	mitochondrion	73.48	74.51
TraesCSU01G147800.1	Wheat	mitochondrion	73.2	74.23
TraesCSU01G177800.1	Wheat	mitochondrion	72.93	73.95
BAC19883	Rice	mitochondrion	71.82	73.86
TraesCS6B01G338300.1	Wheat	mitochondrion	72.1	73.11
TraesCS3B01G516800.1	Wheat	mitochondrion	72.1	72.3
GRMZM5G849223_P01	Maize	plastid	71.27	72.07
TraesCS2B01G283500.1	Wheat	mitochondrion	71.82	72.02
TraesCS5A01G503000.1	Wheat	mitochondrion	70.72	71.71
Solyc01g017630.1.1	Tomato	cytosol	21.82	69.91
BAV58141	Barley	mitochondrion	73.48	69.45
TraesCS6D01G092500.1	Wheat	cytosol	69.06	69.25
HORVU4Hr1G059510.1	Barley	mitochondrion	13.54	62.82
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	16.57	61.22
Solyc11g030940.1.1	Tomato	cytosol, plastid	29.01	61.05
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	33.43	60.5
Zm00001d004058_P001	Maize	cytosol	69.61	58.33
TraesCS1B01G262700.1	Wheat	nucleus	25.69	50.82
OQU81276	Sorghum	cytosol	17.13	46.62

Protein Annotations

MapMan:17.7.1.2.3	Gene3D:3.10.290.10	ProteinID:AIZ06150.1	ProteinID:AIZ06225.1	ProteinID:AKD00159.1	ProteinID:CBX48320.1
EnsemblPlants:CDY45552	ProteinID:CDY45552	ProteinID:CDY45552.1	GO:F8K8N9	UniProt:F8K8N9	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	EnsemblPlantsGene:GSBRNA2T00082255001	InterPro:IPR002942	InterPro:IPR036986
PFAM:PF01479	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd
InterPro:S4_RNA-bd_sf	SMART:SM00363	SUPFAM:SSF55174	UniParc:UPI000217AA36	SEG:seg	:

Description

BnaCnng13110DBnaCnng13110D protein [Source:UniProtKB/TrEMBL;Acc:F8K8N9]

Coordinates

chrLK032627:+:206083..207171

Molecular Weight (calculated)

43026.3 Da

IEP (calculated)

11.738

GRAVY (calculated)

-0.657

Length

362 amino acids

Sequence
(BLAST)

001: MWLLKKLIQR DIDMSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHLKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKEKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.