Factsheet for PGSC0003DMT400083810

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g017630.1.1	Tomato	cytosol	52.81	83.19
TraesCS1B01G262700.1	Wheat	nucleus	51.12	49.73
Solyc11g030940.1.1	Tomato	cytosol, plastid	42.13	43.6
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	46.07	41.0
VIT_00s0396g00050.t01	Wine grape	mitochondrion	76.97	37.85
ATMG00290.1	Thale cress	cytosol	75.28	37.02
AT2G07734.1	Thale cress	cytosol	75.28	37.02
CDY45552	Canola	cytosol	74.72	36.74
BAC19883	Rice	mitochondrion	71.91	36.36
GRMZM5G849223_P01	Maize	plastid	73.03	36.31
HORVU0Hr1G011520.1	Barley	mitochondrion	70.79	35.29
TraesCSU01G177800.1	Wheat	mitochondrion	70.79	35.29
TraesCS6B01G338300.1	Wheat	mitochondrion	70.22	35.01
TraesCSU01G147800.1	Wheat	mitochondrion	70.22	35.01
TraesCS3B01G516800.1	Wheat	mitochondrion	70.22	34.63
TraesCS5A01G503000.1	Wheat	mitochondrion	69.1	34.45
TraesCS2B01G283500.1	Wheat	mitochondrion	69.66	34.35
BAV58141	Barley	mitochondrion	70.79	32.9
TraesCS6D01G092500.1	Wheat	cytosol	62.92	31.02
Zm00001d004058_P001	Maize	cytosol	73.03	30.09
OQU81276	Sorghum	cytosol	9.55	12.78
HORVU4Hr1G059510.1	Barley	mitochondrion	2.81	6.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400083810	EnsemblPlantsGene:PGSC0003DMG400033608	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR002942	InterPro:IPR036986	InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf
PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	PFAM:PF01479	PFscan:PS50889	PGSC:PGSC0003DMG400033608	SMART:SM00363
SUPFAM:SSF55174	UniParc:UPI000295F08B	UniProt:M1D763	MapMan:17.7.1.2.3	:	:

Description

Ribosomal protein S4 [Source:PGSC_GENE;Acc:PGSC0003DMG400033608]

Coordinates

chr12:+:48234095..48235387

Molecular Weight (calculated)

21666.6 Da

IEP (calculated)

11.391

GRAVY (calculated)

-0.596

Length

178 amino acids

Sequence
(BLAST)

001: MHRGRERTSY IPFLLNPETR SDVIPVRLHF CETIPQARQP ISHRRVCVNN GMVNITHFKL SHGDIISFQE NDARTRGEEI KRSFYIEISV EKIIGKFLDH
101: PWRRTKTEWF RLLKTKRGCR LLLKSRFLQQ LRSSMQEEDL ERTKKLVFAT VVFFYERRIL RKNKEVWIRK SMLRQFFR

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.