Factsheet for HORVU0Hr1G011520.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G177800.1	Wheat	mitochondrion	96.64	96.64
TraesCS6B01G338300.1	Wheat	mitochondrion	95.8	95.8
TraesCSU01G147800.1	Wheat	mitochondrion	95.52	95.52
HORVU4Hr1G059510.1	Barley	mitochondrion	20.73	94.87
TraesCS3B01G516800.1	Wheat	mitochondrion	95.52	94.46
TraesCS2B01G283500.1	Wheat	mitochondrion	94.96	93.91
TraesCS5A01G503000.1	Wheat	mitochondrion	93.28	93.28
BAV58141	Barley	mitochondrion	100.0	93.21
BAC19883	Rice	mitochondrion	89.36	90.62
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	50.7	90.5
GRMZM5G849223_P01	Maize	plastid	89.92	89.66
TraesCS6D01G092500.1	Wheat	cytosol	89.08	88.09
VIT_00s0396g00050.t01	Wine grape	mitochondrion	78.99	77.9
CDY45552	Canola	cytosol	74.51	73.48
AT2G07734.1	Thale cress	cytosol	73.67	72.65
ATMG00290.1	Thale cress	cytosol	73.67	72.65
Solyc01g017630.1.1	Tomato	cytosol	22.97	72.57
Zm00001d004058_P001	Maize	cytosol	86.55	71.53
PGSC0003DMT400083810	Potato	cytosol	35.29	70.79
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	16.81	61.22
Solyc11g030940.1.1	Tomato	cytosol, plastid	28.29	58.72
OQU81276	Sorghum	cytosol	20.17	54.14

Protein Annotations

MapMan:17.7.1.2.3	Gene3D:3.10.290.10	UniProt:A0A191TDK7	ProteinID:ANI86448.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	EnsemblPlantsGene:HORVU0Hr1G011520	EnsemblPlants:HORVU0Hr1G011520.1	InterPro:IPR002942
InterPro:IPR036986	PFAM:PF01479	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	InterPro:Ribosomal_S4/S9
InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SUPFAM:SSF55174	UniParc:UPI0007F0F665	SEG:seg

Description

Ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:A0A191TDK7]

Coordinates

chrchrUn:+:65558320..65561301

Molecular Weight (calculated)

42132.6 Da

IEP (calculated)

11.903

GRAVY (calculated)

-0.629

Length

357 amino acids

Sequence
(BLAST)

001: MPALRFKTCR LLPGNVRNRE LSLIQRRILR RLRNKRRSIK RNLSRRENLN SNIKSQTTRK LSLYYGDLPI REMHRGRERT SYIPFLLNQE TRSDVIPVRL
101: HFSDTLPQAR QPISHRRVCL NNGLVTITHL KVSHGDLISF KENDARTRGF EIRRSFYIDI SVGKIIGKFL SAISVGKRRG KFLLARIWRR TKTEWFRLLT
201: TQRGCRLLLK SLFLQELRSY MQEEYFERTK KFGSAKVCLG SSFAEHNRMK RNLFHFKYFF LLKRGKEKNR NLPTRTISPF VYKSSLYSNS TYCSGSPFTR
301: KIRIKRIELP THYSEVNHRT LKAVVSYGPN IGHIPHDIRL KDPNLPLRSG NGRGQNI

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.