CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G849223_P01	Maize	plastid	74.44	27.65
BAC19883	Rice	mitochondrion	62.41	23.58
Zm00001d004058_P001	Maize	cytosol	74.44	22.92
HORVU0Hr1G011520.1	Barley	mitochondrion	54.14	20.17
TraesCSU01G177800.1	Wheat	mitochondrion	54.14	20.17
TraesCSU01G147800.1	Wheat	mitochondrion	54.14	20.17
TraesCS6B01G338300.1	Wheat	mitochondrion	54.14	20.17
TraesCS6D01G092500.1	Wheat	cytosol	53.38	19.67
TraesCS3B01G516800.1	Wheat	mitochondrion	53.38	19.67
TraesCS5A01G503000.1	Wheat	mitochondrion	52.63	19.61
TraesCS2B01G283500.1	Wheat	mitochondrion	52.63	19.39
BAV58141	Barley	mitochondrion	54.14	18.8
VIT_00s0396g00050.t01	Wine grape	mitochondrion	47.37	17.4
CDY45552	Canola	cytosol	46.62	17.13
ATMG00290.1	Thale cress	cytosol	45.86	16.85
AT2G07734.1	Thale cress	cytosol	45.86	16.85
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	9.02	12.24
PGSC0003DMT400083810	Potato	cytosol	12.78	9.55
TraesCS1B01G262700.1	Wheat	nucleus	5.26	3.83
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	3.01	2.0
Solyc11g030940.1.1	Tomato	cytosol, plastid	0.0	0.0
Solyc01g017630.1.1	Tomato	cytosol	0.0	0.0
HORVU4Hr1G059510.1	Barley	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:OQU81276	EnsemblPlantsGene:SORBI_3006G035350	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840
ncoils:Coil	ProteinID:OQU81276	ProteinID:OQU81276.1	SEG:seg	UniParc:UPI000B8B9AF1	UniProt:A0A1Z5RD17
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:10580328..10580913

Molecular Weight (calculated)

16377.6 Da

IEP (calculated)

10.066

GRAVY (calculated)

-1.172

Length

133 amino acids

Sequence
(BLAST)

001: MQEEDLERTK KFGSAKVCLG SSFAEHNRMK RNLFHFKYFF LWKRRKEEEE LIRTIGEAEW KRRKEEEELI RRKEEEEGVE EILKVIEENE NRKRAISPFV
101: YTKKLYRNST YCSGSPFTRK IRIKRTCKDY RIN

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.