Factsheet for Zm00001d004058_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G849223_P01	Maize	plastid	80.09	96.65
BAC19883	Rice	mitochondrion	73.84	90.62
HORVU0Hr1G011520.1	Barley	mitochondrion	71.53	86.55
TraesCSU01G177800.1	Wheat	mitochondrion	70.83	85.71
TraesCSU01G147800.1	Wheat	mitochondrion	70.14	84.87
TraesCS6B01G338300.1	Wheat	mitochondrion	70.14	84.87
TraesCS3B01G516800.1	Wheat	mitochondrion	69.91	83.66
TraesCS2B01G283500.1	Wheat	mitochondrion	69.91	83.66
TraesCS5A01G503000.1	Wheat	mitochondrion	68.98	83.47
BAV58141	Barley	mitochondrion	71.53	80.68
HORVU4Hr1G059510.1	Barley	mitochondrion	14.12	78.21
TraesCS6D01G092500.1	Wheat	cytosol	65.05	77.84
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	35.19	76.0
OQU81276	Sorghum	cytosol	22.92	74.44
Solyc01g017630.1.1	Tomato	cytosol	19.21	73.45
PGSC0003DMT400083810	Potato	cytosol	30.09	73.03
VIT_00s0396g00050.t01	Wine grape	mitochondrion	60.88	72.65
CDY45552	Canola	cytosol	58.33	69.61
ATMG00290.1	Thale cress	cytosol	58.33	69.61
AT2G07734.1	Thale cress	cytosol	58.33	69.61
TraesCS1B01G262700.1	Wheat	nucleus	27.08	63.93
Solyc11g030940.1.1	Tomato	cytosol, plastid	23.84	59.88
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	13.43	59.18

Protein Annotations

MapMan:17.7.1.2.3	Gene3D:3.10.290.10	UniProt:A0A1D6ED91	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	InterPro:IPR002942	InterPro:IPR036986	ProteinID:ONM18258.1	PFAM:PF01479	PFscan:PS50889
PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363
SUPFAM:SSF55174	UniParc:UPI000844427F	EnsemblPlantsGene:Zm00001d004058	EnsemblPlants:Zm00001d004058_P001	EnsemblPlants:Zm00001d004058_T001	SEG:seg

Description

mitochondrial ribosomal protein S4

Coordinates

chr2:-:79938581..79941012

Molecular Weight (calculated)

50273.9 Da

IEP (calculated)

11.040

GRAVY (calculated)

-0.588

Length

432 amino acids

Sequence
(BLAST)

001: MAKLMPGRDH QEILVAAERI HGGSANIGFL RSQLRDLVAN GTESEAFKYG IAELANENLA ANFAAMHLAE SPLDQFGIHP LALALGLGNV RNRELSLIQR
101: RILRRLRNKR RSIKRNLSQR ENLNSNIKSQ TTRKLSLYYG DLPIREMHRG RERTSYIPFL LNQETRSDVI PVRLRFSDTL PQARQPISHR RVCLNNGLVT
201: ITHFKVSHGD LISFKENDAR TRGEEIRRSF YIDISVGKII GKFLPVRIWR RTKTEWFRLL TTQRGCRLLL KSGFLQELRS YMQEEDLERT KKFGSAKVCL
301: GSSFAEHNRM KRNLFHFKYF FLWKRRKEEE EGVEEILKVI EENENRKRAI SPFVYTNKLY RNSTYCSGSP FTITRKIRIK RIELPTHYSE VNHRTLKAVV
401: SYGPNIGHIP HDIRLKDPNL PLRSGNGRGQ NI

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.