Factsheet for TraesCS1B01G262700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g017630.1.1	Tomato	cytosol	43.17	69.91
HORVU4Hr1G023940.1	Barley	mitochondrion, peroxisome	59.56	54.5
PGSC0003DMT400083810	Potato	cytosol	49.73	51.12
Solyc11g030940.1.1	Tomato	cytosol, plastid	36.61	38.95
TraesCS6B01G338300.1	Wheat	mitochondrion	74.86	38.38
TraesCS3B01G516800.1	Wheat	mitochondrion	73.77	37.4
TraesCS2B01G283500.1	Wheat	mitochondrion	73.22	37.12
GRMZM5G849223_P01	Maize	plastid	63.93	32.68
BAC19883	Rice	mitochondrion	62.3	32.39
Zm00001d004058_P001	Maize	cytosol	63.93	27.08
VIT_00s0396g00050.t01	Wine grape	mitochondrion	53.55	27.07
CDY45552	Canola	cytosol	50.82	25.69
AT2G07734.1	Thale cress	cytosol	50.27	25.41
ATMG00290.1	Thale cress	cytosol	50.27	25.41
Solyc10g045740.1.1	Tomato	cytosol, mitochondrion	8.74	16.33
OQU81276	Sorghum	cytosol	3.83	5.26

Protein Annotations

EnsemblPlants:TraesCS1B01G262700.1	EnsemblPlantsGene:TraesCS1B01G262700	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR002942	InterPro:IPR036986	InterPro:Ribosomal_S4/S9	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf
PANTHER:PTHR11831	PANTHER:PTHR11831:SF12	PFAM:PF01479	PFscan:PS50889	SMART:SM00363	SUPFAM:SSF55174
TIGR:cd00165	MapMan:17.7.1.2.3	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:461426817..461427368

Molecular Weight (calculated)

21327.9 Da

IEP (calculated)

11.092

GRAVY (calculated)

-0.647

Length

183 amino acids

Sequence
(BLAST)

001: METIRRYNYH QSSIREMHRG RELTSYIPFL LNQETRSDVI PVRLHFSDTL PQARQPISHR RVCLNNGLVT ITHLKVSHGD LISFKENDAR TRGFEIRRSF
101: YIDISVGKII GKFLSAISVG KRRGKFLPAR IWRRTKKKNG SAYSQLRGDA AYYSNPRNCK SCILICKKKT LKEQRSLDPQ KYA

Best Arabidopsis Sequence Match ( AT2G07734.1 )
(BLAST)

001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI

Arabidopsis Description

Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:TAIR;Acc:AT2G07734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.