Factsheet for VIT_18s0001g14610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75820.1	VIT_18s0001g14610.t01	AT1G75820.1	9294234

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015812.1-P	Field mustard	cytosol	55.0	70.92
AT1G75820.1	Thale cress	plasma membrane	68.06	68.06
CDX73202	Canola	plasma membrane	68.37	67.88
PGSC0003DMT400025747	Potato	plasma membrane	67.65	67.52
Solyc04g081590.2.1	Tomato	plasma membrane	67.86	67.44
CDX87661	Canola	plasma membrane	66.33	67.36
KRH24413	Soybean	plasma membrane	64.69	64.24
KRH29397	Soybean	plasma membrane	63.16	63.1
GSMUA_Achr9P24170_001	Banana	plasma membrane	50.82	61.1
TraesCS7A01G533800.1	Wheat	cytosol, plasma membrane, plastid	45.31	58.65
KRH29398	Soybean	cytosol	37.04	57.44
Os06t0717200-01	Rice	plasma membrane	57.35	56.54
KXG20897	Sorghum	plasma membrane	56.84	55.7
Zm00001d014793_P001	Maize	plasma membrane	56.22	55.32
GSMUA_Achr3P26680_001	Banana	extracellular, plasma membrane	34.18	54.83
VIT_00s1353g00010.t01	Wine grape	plasma membrane	55.61	53.59
HORVU0Hr1G022670.2	Barley	mitochondrion	56.94	52.15
VIT_01s0010g00330.t01	Wine grape	plasma membrane	51.53	51.11
VIT_12s0035g00990.t01	Wine grape	plasma membrane	49.8	50.0
TraesCS7D01G521200.1	Wheat	plasma membrane	54.9	48.64
HORVU5Hr1G085130.1	Barley	endoplasmic reticulum, plasma membrane	20.82	45.64
TraesCSU01G171600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	20.2	44.0
VIT_16s0013g01990.t01	Wine grape	nucleus, plasma membrane, vacuole	40.41	38.15
VIT_18s0001g02590.t01	Wine grape	plastid	34.08	35.65
VIT_05s0051g00460.t01	Wine grape	plasma membrane	39.29	34.84
VIT_04s0008g03240.t01	Wine grape	plasma membrane	33.88	34.33
VIT_19s0027g00010.t01	Wine grape	plasma membrane	38.47	33.93
VIT_11s0149g00090.t01	Wine grape	plasma membrane	33.57	33.85
VIT_17s0000g08900.t01	Wine grape	plasma membrane	36.33	32.72
VIT_18s0001g15720.t01	Wine grape	plasma membrane	35.71	32.17
VIT_07s0005g05420.t01	Wine grape	plasma membrane	31.63	31.73
VIT_05s0051g00540.t01	Wine grape	plasma membrane	36.02	30.94
VIT_19s0015g01120.t01	Wine grape	plasma membrane	32.24	30.92
VIT_09s0018g01900.t01	Wine grape	plasma membrane	31.33	30.43
VIT_01s0010g00380.t01	Wine grape	plasma membrane	34.8	27.19
VIT_16s0098g01090.t01	Wine grape	plasma membrane, plastid	29.18	26.98
VIT_07s0005g04390.t01	Wine grape	plasma membrane	36.94	25.53

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100260741	wikigene:100260741	MapMan:18.4.1.11	Gene3D:3.30.200.20	Gene3D:3.80.10.10
ProteinID:CCB46051	ProteinID:CCB46051.1	UniProt:F6H1M3	EMBL:FN595227	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010080	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0040007	GO:GO:0048833	InterPro:IPR000719
InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100260741	wikigene:LOC100260741	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00069	PFAM:PF00560	PFAM:PF08263
PFAM:PF13855	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51450	PANTHER:PTHR27000	PANTHER:PTHR27000:SF231
InterPro:Prot_kinase_dom	SMART:SM00220	SMART:SM00369	SUPFAM:SSF52047	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	TIGR:TC58648	TMHMM:TMhelix	UniParc:UPI00015C74CB	ArrayExpress:VIT_18s0001g14610	EnsemblPlantsGene:VIT_18s0001g14610
EnsemblPlants:VIT_18s0001g14610.t01	unigene:Vvi.8935	RefSeq:XP_002279563	RefSeq:XP_002279563.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:12668387..12671744

Molecular Weight (calculated)

107295.0 Da

IEP (calculated)

7.397

GRAVY (calculated)

0.074

Length

980 amino acids

Sequence
(BLAST)

001: MRASLKYALP FFICLMMFSR GFAYGDLQVL LKLRSFMIGP KGSGLEDWVD DSSSLFPHCS FSGVSCDEDS RVVSLNLSFV TLFGSIPPEI GMLNKLVNLT
101: LACDNLTGKL PMEMAKLTSL KLVNLSNNNF NGQFPGRILV GMKELEVLDM YNNNFTGPLP TEVGKLKKLK HMHLGGNYFS GDIPDVFSDI HSLELLGLNG
201: NNLSGRIPTS LVRLSNLQGL FLGYFNIYEG GIPPELGLLS SLRVLDLGSC NLTGEIPPSL GRLKMLHSLF LQLNQLSGHL PQELSGLVNL KSLDLSNNVL
301: TGEIPESFSQ LRELTLINLF GNQLRGRIPE FIGDLPNLEV LQVWENNFTF ELPERLGRNG KLKNLDVATN HLTGTIPRDL CKGGKLLTLI LMENYFFGPI
401: PEQLGECKSL TRIRIMKNFF NGTIPAGLFN LPLVNMLELD DNLFTGELPA HISGDVLGIF TVSNNLITGK IPPAIGNLSS LQTLALQINR FSGEIPGEIF
501: NLKMLSKVNI SANNLSGEIP ACIVSCTSLT SIDFSQNSLN GEIPKGIAKL GILGILNLST NHLNGQIPSE IKSMASLTTL DLSYNDFSGV IPTGGQFPVF
601: NSSSFAGNPN LCLPRVPCSS LQNITQIHGR RQTSSFTSSK LVITIIALVA FALVLTLAVL RIRRKKHQKS KAWKLTAFQR LDFKAEDVLE CLKEENIIGK
701: GGAGIVYRGS MPDGVDVAIK RLVGRGSGRS DHGFSAEIQT LGRIRHRNIV RLLGYVSNKD TNLLLYEYMP NGSLGEILHG SKGAHLQWET RYRIAVEAAK
801: GLCYLHHDCS PLIIHRDVKS NNILLDSDFE AHVADFGLAK FLQDAGASEC MSSIAGSYGY IAPEYAYTLK VDEKSDVYSF GVVLLELIAG RKPVGEFGDG
901: VDIVRWVRKT TSEISQPSDR ASVLAVVDPR LSGYPLTGVI NLFKIAMMCV EDESSARPTM REVVHMLTNP PQNAPSLITL

Best Arabidopsis Sequence Match ( AT1G75820.1 )
(BLAST)

001: MAMRLLKTHL LFLHLYLFFS PCFAYTDMEV LLNLKSSMIG PKGHGLHDWI HSSSPDAHCS FSGVSCDDDA RVISLNVSFT PLFGTISPEI GMLTHLVNLT
101: LAANNFTGEL PLEMKSLTSL KVLNISNNGN LTGTFPGEIL KAMVDLEVLD TYNNNFNGKL PPEMSELKKL KYLSFGGNFF SGEIPESYGD IQSLEYLGLN
201: GAGLSGKSPA FLSRLKNLRE MYIGYYNSYT GGVPPEFGGL TKLEILDMAS CTLTGEIPTS LSNLKHLHTL FLHINNLTGH IPPELSGLVS LKSLDLSINQ
301: LTGEIPQSFI NLGNITLINL FRNNLYGQIP EAIGELPKLE VFEVWENNFT LQLPANLGRN GNLIKLDVSD NHLTGLIPKD LCRGEKLEML ILSNNFFFGP
401: IPEELGKCKS LTKIRIVKNL LNGTVPAGLF NLPLVTIIEL TDNFFSGELP VTMSGDVLDQ IYLSNNWFSG EIPPAIGNFP NLQTLFLDRN RFRGNIPREI
501: FELKHLSRIN TSANNITGGI PDSISRCSTL ISVDLSRNRI NGEIPKGINN VKNLGTLNIS GNQLTGSIPT GIGNMTSLTT LDLSFNDLSG RVPLGGQFLV
601: FNETSFAGNT YLCLPHRVSC PTRPGQTSDH NHTALFSPSR IVITVIAAIT GLILISVAIR QMNKKKNQKS LAWKLTAFQK LDFKSEDVLE CLKEENIIGK
701: GGAGIVYRGS MPNNVDVAIK RLVGRGTGRS DHGFTAEIQT LGRIRHRHIV RLLGYVANKD TNLLLYEYMP NGSLGELLHG SKGGHLQWET RHRVAVEAAK
801: GLCYLHHDCS PLILHRDVKS NNILLDSDFE AHVADFGLAK FLVDGAASEC MSSIAGSYGY IAPEYAYTLK VDEKSDVYSF GVVLLELIAG KKPVGEFGEG
901: VDIVRWVRNT EEEITQPSDA AIVVAIVDPR LTGYPLTSVI HVFKIAMMCV EEEAAARPTM REVVHMLTNP PKSVANLIAF

Arabidopsis Description

CLV1Leucine-rich repeat receptor-like protein kinase (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0LGJ2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.