Factsheet for VIT_07s0005g05420.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 3
plasma membrane 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19929	Canola	cytosol	57.32	67.07
CDY56672	Canola	cytosol	57.11	66.91
PGSC0003DMT400040886	Potato	plasma membrane	72.67	62.89
Solyc09g061940.1.1	Tomato	plasma membrane	72.26	62.59
VIT_05s0051g00540.t01	Wine grape	plasma membrane	70.73	60.56
KRH46804	Soybean	plasma membrane	70.62	59.84
KRG99860	Soybean	plasma membrane	70.32	59.84
GSMUA_Achr8P12880_001	Banana	plasma membrane	41.97	58.82
AT5G48940.1	Thale cress	plasma membrane	66.94	57.62
Bra036154.1-P	Field mustard	plasma membrane	66.22	57.41
GSMUA_Achr11P...	Banana	plasma membrane	40.43	54.56
Os04t0132500-01	Rice	plasma membrane	61.11	52.05
TraesCS2D01G013700.1	Wheat	plasma membrane	61.31	51.77
TraesCS2B01G005000.1	Wheat	plasma membrane	61.72	51.76
TraesCS2A01G012900.1	Wheat	plasma membrane	61.72	51.67
Zm00001d025002_P001	Maize	plasma membrane	61.21	51.6
EES10396	Sorghum	plasma membrane	60.8	50.68
HORVU0Hr1G001770.1	Barley	mitochondrion, plasma membrane, plastid	50.46	49.15
TraesCS4D01G005000.1	Wheat	plasma membrane	53.74	49.02
TraesCSU01G061100.1	Wheat	plastid	49.85	45.81
VIT_18s0001g15720.t01	Wine grape	plasma membrane	49.74	44.67
VIT_17s0000g08900.t01	Wine grape	plasma membrane	45.14	40.53
TraesCS3D01G534900.1	Wheat	plasma membrane	40.84	39.47
VIT_19s0015g01120.t01	Wine grape	plasma membrane	40.94	39.14
VIT_18s0001g02590.t01	Wine grape	plastid	37.36	38.95
VIT_01s0010g00330.t01	Wine grape	plasma membrane	32.75	32.39
VIT_05s0051g00460.t01	Wine grape	plasma membrane	36.44	32.22
VIT_00s1353g00010.t01	Wine grape	plasma membrane	33.16	31.86
VIT_18s0001g14610.t01	Wine grape	plasma membrane	31.73	31.63
VIT_12s0035g00990.t01	Wine grape	plasma membrane	31.53	31.56
VIT_16s0013g01990.t01	Wine grape	nucleus, plasma membrane, vacuole	33.27	31.31
VIT_19s0027g00010.t01	Wine grape	plasma membrane	35.11	30.87
VIT_09s0018g01900.t01	Wine grape	plasma membrane	31.22	30.23
VIT_04s0008g03240.t01	Wine grape	plasma membrane	28.35	28.65
VIT_11s0149g00090.t01	Wine grape	plasma membrane	26.3	26.44
VIT_01s0010g00380.t01	Wine grape	plasma membrane	32.34	25.2
VIT_16s0098g01090.t01	Wine grape	plasma membrane, plastid	26.1	24.06
VIT_07s0005g04390.t01	Wine grape	plasma membrane	31.63	21.79

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.11	Gene3D:3.30.200.20	Gene3D:3.80.10.10	ProteinID:CCB60240	ProteinID:CCB60240.1
UniProt:F6HZX4	EMBL:FN596502	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PFAM:PF00069	PFAM:PF08263	PFAM:PF13516	PFAM:PF13855	PRINTS:PR00019	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51450	PANTHER:PTHR27000	PANTHER:PTHR27000:SF290	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SMART:SM00365	SMART:SM00369	SUPFAM:SSF52047	SUPFAM:SSF52058
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002109484	ArrayExpress:VIT_07s0005g05420
EnsemblPlantsGene:VIT_07s0005g05420	EnsemblPlants:VIT_07s0005g05420.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:9482476..9486270

Molecular Weight (calculated)

107329.0 Da

IEP (calculated)

6.122

GRAVY (calculated)

-0.062

Length

977 amino acids

Sequence
(BLAST)

001: MPMPRQYFNT HNQHPMSRQS FCTHHLHLLF CNRNLPHFLL LLLLASSCAV SAANNEALTL YSWLHSSPSP PLGFSDWNPL APHPCNWSYI TCSSENFNLK
101: VLGLAYTKIS GSIPVSLGKL SKLQTLSVYT TMLSGEIPQE LGNCSELVDL FLYENSLSGS LPLQLGKLQK LEKMLLWQNN LDGTIPEEIG NCGSLRTLDL
201: SLNSFSGSIP LSFGTLTMLE ELMLSNNNLS GSIPSGLSNA TNLLQLQVDT NQISGPIPQE LGMLRDLTVF FGWDNKFEGS IPSALAGCRS LQALDLSHNS
301: LTGSLPPGLF QLQNLTKLLL ISNDISGSIP VEIGNCSSLV RLRLQDNKIT GEIPKEVGFL TNLSFLDLSQ NRLSGRVPDE IGNCTDLQMV DLSNNSFFEG
401: EIPGSFGQLT ALNRLVLRRN SLSGSIPSSL GQCSSLQLLD LSSNALSGGI PKELFGIEAL DIALNLSWNA LTGVISPQIS ALSRLSILDL SHNKIGGDLM
501: ALSGLENLVS LNISYNNFSG YLPDNKLFRQ LSATDLAGNK GLCSSNRDSC FVRNPADVGL PNSSRFRRSQ RLKLAIALLV ALTVAMAILG MLAVFRARKM
601: VGDDNDSELG GDSWPWQFTP FQKLNFSVEQ VLRCLVEANV IGKGCSGVVY RAEMENGEVI AVKKLWPTTL AAGYNCVRDS FSTEVKTLGS IRHKNIVRFL
701: GCCWNQSTRL LMYDFMPNGS LGSLLHERSR CCLEWDLRYR IVLGSAQGLS YLHHDCVPPI VHRDIKANNI LIGFDFEPYI ADFGLAKLVD DRDYARSSNT
801: IAGSYGYIAP EYGYMMKITE KSDVYSYGVV VLEVLTGKQP IDPTIPDGLH IVDWVRQRKG QIEVLDPSLH SRPESELEEM MQTLGVALLC VNPTPDDRPS
901: MKDVAAMLKE IRHEREESMK VDMLLKGSPE NGRHEVNNSG GGPSEMMQCS YPQSNNTSFS ASSLLYSSSC NAKMPFK

Best Arabidopsis Sequence Match ( AT5G48940.1 )
(BLAST)

0001: MSLQMPIPRK KALTVSHFSI TLSLFLAFFI SSTSASTNEV SALISWLHSS NSPPPSVFSG WNPSDSDPCQ WPYITCSSSD NKLVTEINVV SVQLALPFPP
0101: NISSFTSLQK LVISNTNLTG AISSEIGDCS ELIVIDLSSN SLVGEIPSSL GKLKNLQELC LNSNGLTGKI PPELGDCVSL KNLEIFDNYL SENLPLELGK
0201: ISTLESIRAG GNSELSGKIP EEIGNCRNLK VLGLAATKIS GSLPVSLGQL SKLQSLSVYS TMLSGEIPKE LGNCSELINL FLYDNDLSGT LPKELGKLQN
0301: LEKMLLWQNN LHGPIPEEIG FMKSLNAIDL SMNYFSGTIP KSFGNLSNLQ ELMLSSNNIT GSIPSILSNC TKLVQFQIDA NQISGLIPPE IGLLKELNIF
0401: LGWQNKLEGN IPDELAGCQN LQALDLSQNY LTGSLPAGLF QLRNLTKLLL ISNAISGVIP LEIGNCTSLV RLRLVNNRIT GEIPKGIGFL QNLSFLDLSE
0501: NNLSGPVPLE ISNCRQLQML NLSNNTLQGY LPLSLSSLTK LQVLDVSSND LTGKIPDSLG HLISLNRLIL SKNSFNGEIP SSLGHCTNLQ LLDLSSNNIS
0601: GTIPEELFDI QDLDIALNLS WNSLDGFIPE RISALNRLSV LDISHNMLSG DLSALSGLEN LVSLNISHNR FSGYLPDSKV FRQLIGAEME GNNGLCSKGF
0701: RSCFVSNSSQ LTTQRGVHSH RLRIAIGLLI SVTAVLAVLG VLAVIRAKQM IRDDNDSETG ENLWTWQFTP FQKLNFTVEH VLKCLVEGNV IGKGCSGIVY
0801: KAEMPNREVI AVKKLWPVTV PNLNEKTKSS GVRDSFSAEV KTLGSIRHKN IVRFLGCCWN KNTRLLMYDY MSNGSLGSLL HERSGVCSLG WEVRYKIILG
0901: AAQGLAYLHH DCVPPIVHRD IKANNILIGP DFEPYIGDFG LAKLVDDGDF ARSSNTIAGS YGYIAPEYGY SMKITEKSDV YSYGVVVLEV LTGKQPIDPT
1001: IPDGLHIVDW VKKIRDIQVI DQGLQARPES EVEEMMQTLG VALLCINPIP EDRPTMKDVA AMLSEICQER EESMKVDGCS GSCNNGRERG KDDSTSSVMQ
1101: QTAKYLRSSS TSFSASSLLY SSSSSATSNV RPNLK

Arabidopsis Description

RCH1LRR receptor-like serine/threonine-protein kinase RCH1 [Source:UniProtKB/Swiss-Prot;Acc:C0LGV1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.