Factsheet for VIT_18s0001g02590.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
plasma membrane 2
peroxisome 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P15820_001	Banana	plasma membrane	66.92	72.32
KRG91721	Soybean	plasma membrane	83.24	72.29
KRH35050	Soybean	plasma membrane	83.35	72.25
PGSC0003DMT400064535	Potato	plasma membrane	83.67	72.06
PGSC0003DMT400059664	Potato	plasma membrane	80.79	70.22
Solyc12g056730.1.1	Tomato	plasma membrane, vacuole	80.15	69.73
AT1G34110.1	Thale cress	extracellular, plasma membrane	75.35	65.86
CDX73290	Canola	plasma membrane	75.13	64.12
Bra034446.1-P	Field mustard	plasma membrane	74.81	64.02
CDY28391	Canola	plasma membrane	73.0	63.87
Os06t0589800-01	Rice	extracellular	71.18	62.22
TraesCS7B01G260400.1	Wheat	plasma membrane	70.97	62.21
EER89985	Sorghum	plasma membrane	71.4	62.17
TraesCS7D01G354700.1	Wheat	plasma membrane	70.86	62.11
Zm00001d046485_P001	Maize	plasma membrane	71.08	61.72
TraesCS7A01G368200.1	Wheat	plasma membrane	70.22	61.55
HORVU7Hr1G085600.1	Barley	plasma membrane	69.48	60.5
GSMUA_Achr10P...	Banana	plastid	47.6	59.47
VIT_18s0001g15720.t01	Wine grape	plasma membrane	45.78	39.43
VIT_05s0051g00540.t01	Wine grape	plasma membrane	47.17	38.74
VIT_17s0000g08900.t01	Wine grape	plasma membrane	44.29	38.14
VIT_07s0005g05420.t01	Wine grape	plasma membrane	38.95	37.36
VIT_19s0015g01120.t01	Wine grape	plasma membrane	40.66	37.28
VIT_01s0010g00330.t01	Wine grape	plasma membrane	35.97	34.11
VIT_18s0001g14610.t01	Wine grape	plasma membrane	35.65	34.08
VIT_00s1353g00010.t01	Wine grape	plasma membrane	36.71	33.83
VIT_12s0035g00990.t01	Wine grape	plasma membrane	35.01	33.61
VIT_05s0051g00460.t01	Wine grape	plasma membrane	39.38	33.39
VIT_19s0027g00010.t01	Wine grape	plasma membrane	38.42	32.4
VIT_04s0008g03240.t01	Wine grape	plasma membrane	32.44	31.44
VIT_16s0013g01990.t01	Wine grape	nucleus, plasma membrane, vacuole	34.37	31.02
VIT_09s0018g01900.t01	Wine grape	plasma membrane	32.44	30.13
VIT_11s0149g00090.t01	Wine grape	plasma membrane	29.56	28.5
VIT_01s0010g00380.t01	Wine grape	plasma membrane	37.89	28.31
VIT_16s0098g01090.t01	Wine grape	plasma membrane, plastid	29.24	25.85
VIT_07s0005g04390.t01	Wine grape	plasma membrane	29.03	19.18

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100258033	wikigene:100258033	MapMan:11.10.1.8.2	MapMan:18.4.1.11	Gene3D:3.30.200.20
Gene3D:3.80.10.10	ProteinID:CCB52344	ProteinID:CCB52344.1	UniProt:F6HJE5	EMBL:FN595772	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100258033
wikigene:LOC100258033	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00069
PFAM:PF00560	PFAM:PF08263	PFAM:PF13855	PRINTS:PR00019	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF33	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI00021087E9
ArrayExpress:VIT_18s0001g02590	EnsemblPlantsGene:VIT_18s0001g02590	EnsemblPlants:VIT_18s0001g02590.t01	RefSeq:XP_002263569	RefSeq:XP_002263569.2	SEG:seg

Description

No Description!

Coordinates

chr18_random:-:2829790..2832603

Molecular Weight (calculated)

101681.0 Da

IEP (calculated)

7.121

GRAVY (calculated)

0.101

Length

937 amino acids

Sequence
(BLAST)

001: MAQTLVTSLS PDGQALLSLL AAADPSSKSS SAVLSSWNPS SSTPCAWQGI TCSPQDRVIS LSLPNTFLNL SSLPSQLSSL SFLQLLNLSS TNVSGTIPPS
101: FGLLSHLRLL DLSSNSLSGP IPPQLGGLSS LEFLFLNSNR LSGSIPQQLA NLSSLQVLCL QDNLLNGSIP FHLGSLVSLQ QFRIGGNPYL TGEIPPQLGL
201: LTNLTTFGAA ATGLSGVIPP TFGNLINLQT LALYDTEVFG SVPPELGLCS ELRNLYLHMN KLTGSIPPQL GRLQKLTSLL LWGNSLTGPI PPDLSNCSSL
301: VILDASANEL SGEIPGDLGK LVVLEQLHLS DNSLTGLIPW QLSNCTSLTA LQLDKNQLSG PIPWQVGYLK YLQSFFLWGN LVSGTIPSSF GNCTELYALD
401: LSRNKLTGSI PEEIFGLKKL SKLLLLGNSL SGRLPRSVSN CQSLVRLRLG ENQLSGQIPK EIGQLQNLVF LDLYMNHFSG RLPHEIANIT VLELLDVHNN
501: YITGEIPSQL GELVNLEQLD LSRNSFTGGI PWSFGNFSYL NKLILNNNLL TGSIPKSIRN LQKLTLLDLS FNSLSGPIPP EIGYITSLTI SLDLGSNGFT
601: GELPETMSGL TQLQSLDLSQ NMLYGKIGVL GLLTSLTSLN ISYNNFSGPI PVTTFFRTLS STSYLENPRL CQSMDGYTCS SGLARRNGMK SAKTAALICV
701: ILASVIMSVI ASWILVTRNH KYMVEKSSGT SASSSGAEDF SYPWTFIPFQ KLNFTIDNIL DCLKDENVIG KGCSGVVYKA EMPNGELIAV KKLWKTMKDE
801: DPVDSFASEI QILGHIRHRN IVKLLGYCSN KCVKLLLYNY ISNGNLQQLL QGNRNLDWET RYKIAVGSAQ GLAYLHHDCL PTILHRDVKC NNILLDSKYE
901: AYLADFGLAK MMISPNYHQA ISRVAGSYGY IAPGKQF

Best Arabidopsis Sequence Match ( AT1G34110.2 )
(BLAST)

0001: MERERSNFFF LFLFCSWVSM AQPTLSLSSD GQALLSLKRP SPSLFSSWDP QDQTPCSWYG ITCSADNRVI SVSIPDTFLN LSSIPDLSSL SSLQFLNLSS
0101: TNLSGPIPPS FGKLTHLRLL DLSSNSLSGP IPSELGRLST LQFLILNANK LSGSIPSQIS NLFALQVLCL QDNLLNGSIP SSFGSLVSLQ QFRLGGNTNL
0201: GGPIPAQLGF LKNLTTLGFA ASGLSGSIPS TFGNLVNLQT LALYDTEISG TIPPQLGLCS ELRNLYLHMN KLTGSIPKEL GKLQKITSLL LWGNSLSGVI
0301: PPEISNCSSL VVFDVSANDL TGDIPGDLGK LVWLEQLQLS DNMFTGQIPW ELSNCSSLIA LQLDKNKLSG SIPSQIGNLK SLQSFFLWEN SISGTIPSSF
0401: GNCTDLVALD LSRNKLTGRI PEELFSLKRL SKLLLLGNSL SGGLPKSVAK CQSLVRLRVG ENQLSGQIPK EIGELQNLVF LDLYMNHFSG GLPYEISNIT
0501: VLELLDVHNN YITGDIPAQL GNLVNLEQLD LSRNSFTGNI PLSFGNLSYL NKLILNNNLL TGQIPKSIKN LQKLTLLDLS YNSLSGEIPQ ELGQVTSLTI
0601: NLDLSYNTFT GNIPETFSDL TQLQSLDLSS NSLHGDIKVL GSLTSLASLN ISCNNFSGPI PSTPFFKTIS TTSYLQNTNL CHSLDGITCS SHTGQNNGVK
0701: SPKIVALTAV ILASITIAIL AAWLLILRNN HLYKTSQNSS SSPSTAEDFS YPWTFIPFQK LGITVNNIVT SLTDENVIGK GCSGIVYKAE IPNGDIVAVK
0801: KLWKTKDNNE EGESTIDSFA AEIQILGNIR HRNIVKLLGY CSNKSVKLLL YNYFPNGNLQ QLLQGNRNLD WETRYKIAIG AAQGLAYLHH DCVPAILHRD
0901: VKCNNILLDS KYEAILADFG LAKLMMNSPN YHNAMSRVAG SYGYIAPEYG YTMNITEKSD VYSYGVVLLE ILSGRSAVEP QIGDGLHIVE WVKKKMGTFE
1001: PALSVLDVKL QGLPDQIVQE MLQTLGIAMF CVNPSPVERP TMKEVVTLLM EVKCSPEEWD SQFKFQILS

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Source:UniProtKB/Swiss-Prot;Acc:C0LGF5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.